Record Information |
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Version | 2.0 |
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Created at | 2022-09-08 02:24:10 UTC |
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Updated at | 2022-09-08 02:24:10 UTC |
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NP-MRD ID | NP0260285 |
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Secondary Accession Numbers | None |
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Natural Product Identification |
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Common Name | (4s,6r)-6-[(4-bromo-1h-pyrrole-2-carbonyloxy)methyl]-6-methyl-4,5-dihydro-1h-pyrimidine-4-carboxylic acid |
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Description | Manzacidin A belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof. (4s,6r)-6-[(4-bromo-1h-pyrrole-2-carbonyloxy)methyl]-6-methyl-4,5-dihydro-1h-pyrimidine-4-carboxylic acid is found in Axinella verrucosa. (4s,6r)-6-[(4-bromo-1h-pyrrole-2-carbonyloxy)methyl]-6-methyl-4,5-dihydro-1h-pyrimidine-4-carboxylic acid was first documented in 2010 (PMID: 20714430). Based on a literature review a small amount of articles have been published on manzacidin A (PMID: 29353267) (PMID: 25504989) (PMID: 23350911) (PMID: 22113586). |
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Structure | C[C@]1(COC(=O)C2=CC(Br)=CN2)C[C@H](N=CN1)C(O)=O InChI=1S/C12H14BrN3O4/c1-12(3-9(10(17)18)15-6-16-12)5-20-11(19)8-2-7(13)4-14-8/h2,4,6,9,14H,3,5H2,1H3,(H,15,16)(H,17,18)/t9-,12+/m0/s1 |
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Synonyms | Not Available |
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Chemical Formula | C12H14BrN3O4 |
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Average Mass | 344.1650 Da |
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Monoisotopic Mass | 343.01677 Da |
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IUPAC Name | (4S,6R)-6-[(4-bromo-1H-pyrrole-2-carbonyloxy)methyl]-6-methyl-1,4,5,6-tetrahydropyrimidine-4-carboxylic acid |
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Traditional Name | (4S,6R)-6-[(4-bromo-1H-pyrrole-2-carbonyloxy)methyl]-6-methyl-4,5-dihydro-1H-pyrimidine-4-carboxylic acid |
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CAS Registry Number | Not Available |
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SMILES | C[C@]1(COC(=O)C2=CC(Br)=CN2)C[C@H](N=CN1)C(O)=O |
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InChI Identifier | InChI=1S/C12H14BrN3O4/c1-12(3-9(10(17)18)15-6-16-12)5-20-11(19)8-2-7(13)4-14-8/h2,4,6,9,14H,3,5H2,1H3,(H,15,16)(H,17,18)/t9-,12+/m0/s1 |
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InChI Key | GIJXHAABQHRBTG-JOYOIKCWSA-N |
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Experimental Spectra |
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| Not Available | Predicted Spectra |
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| Spectrum Type | Description | Depositor ID | Depositor Organization | Depositor | Deposition Date | View |
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1D NMR | 13C NMR Spectrum (1D, 25 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 100 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 252 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 50 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 200 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 75 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 300 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 101 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 400 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 126 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 500 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 151 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 600 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 176 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 700 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 201 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 800 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 13C NMR Spectrum (1D, 226 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum | 1D NMR | 1H NMR Spectrum (1D, 900 MHz, H2O, predicted) | Wishart Lab | Wishart Lab | David Wishart | 2021-06-20 | View Spectrum |
| Chemical Shift Submissions |
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| Not Available | Species |
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Species of Origin | |
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Chemical Taxonomy |
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Description | Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof. |
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Kingdom | Organic compounds |
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Super Class | Organic acids and derivatives |
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Class | Carboxylic acids and derivatives |
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Sub Class | Amino acids, peptides, and analogues |
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Direct Parent | Alpha amino acids and derivatives |
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Alternative Parents | |
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Substituents | - Alpha-amino acid or derivatives
- Hydropyrimidine carboxylic acid derivative
- Pyrrole-2-carboxylic acid or derivatives
- Aryl bromide
- Aryl halide
- Dicarboxylic acid or derivatives
- Hydropyrimidine
- 1,4,5,6-tetrahydropyrimidine
- Substituted pyrrole
- Heteroaromatic compound
- Pyrrole
- Carboxylic acid ester
- Amidine
- Formamidine
- Carboxylic acid amidine
- Carboxylic acid
- Azacycle
- Organoheterocyclic compound
- Organic 1,3-dipolar compound
- Propargyl-type 1,3-dipolar organic compound
- Carboximidamide
- Hydrocarbon derivative
- Organic oxide
- Organic oxygen compound
- Carbonyl group
- Organohalogen compound
- Organobromide
- Organonitrogen compound
- Organooxygen compound
- Organopnictogen compound
- Organic nitrogen compound
- Aromatic heteromonocyclic compound
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Molecular Framework | Aromatic heteromonocyclic compounds |
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External Descriptors | Not Available |
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Physical Properties |
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State | Not Available |
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Experimental Properties | Property | Value | Reference |
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Melting Point | Not Available | Not Available | Boiling Point | Not Available | Not Available | Water Solubility | Not Available | Not Available | LogP | Not Available | Not Available |
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Predicted Properties | |
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General References | - Hamed ANE, Schmitz R, Bergermann A, Totzke F, Kubbutat M, Muller WEG, Youssef DTA, Bishr MM, Kamel MS, Edrada-Ebel R, Watjen W, Proksch P: Bioactive pyrrole alkaloids isolated from the Red Sea: marine sponge Stylissa carteri. Z Naturforsch C J Biosci. 2018 Apr 25;73(5-6):199-210. doi: 10.1515/znc-2017-0161. [PubMed:29353267 ]
- Nagatomo M, Nishiyama H, Fujino H, Inoue M: Decarbonylative radical coupling of alpha-aminoacyl tellurides: single-step preparation of gamma-amino and alpha,beta-diamino acids and rapid synthesis of gabapentin and manzacidin A. Angew Chem Int Ed Engl. 2015 Jan 26;54(5):1537-41. doi: 10.1002/anie.201410186. Epub 2014 Dec 10. [PubMed:25504989 ]
- Yoshimura T, Kinoshita T, Yoshioka H, Kawabata T: Asymmetric intermolecular conjugate addition of amino acid derivatives via memory of chirality: total synthesis of manzacidin A. Org Lett. 2013 Feb 15;15(4):864-7. doi: 10.1021/ol303568f. Epub 2013 Jan 25. [PubMed:23350911 ]
- Ichikawa Y, Okumura K, Matsuda Y, Hasegawa T, Nakamura M, Fujimoto A, Masuda T, Nakano K, Kotsuki H: Synthesis of manzacidin A and C: efficient construction of quaternary carbon stereocenters bearing nitrogen substituents. Org Biomol Chem. 2012 Jan 21;10(3):614-22. doi: 10.1039/c1ob06559a. Epub 2011 Nov 24. [PubMed:22113586 ]
- Scala F, Fattorusso E, Menna M, Taglialatela-Scafati O, Tierney M, Kaiser M, Tasdemir D: Bromopyrrole alkaloids as lead compounds against protozoan parasites. Mar Drugs. 2010 Jul 14;8(7):2162-74. doi: 10.3390/md8072162. [PubMed:20714430 ]
- LOTUS database [Link]
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