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Record Information
Version2.0
Created at2022-09-08 02:24:10 UTC
Updated at2022-09-08 02:24:10 UTC
NP-MRD IDNP0260285
Secondary Accession NumbersNone
Natural Product Identification
Common Name(4s,6r)-6-[(4-bromo-1h-pyrrole-2-carbonyloxy)methyl]-6-methyl-4,5-dihydro-1h-pyrimidine-4-carboxylic acid
DescriptionManzacidin A belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof. (4s,6r)-6-[(4-bromo-1h-pyrrole-2-carbonyloxy)methyl]-6-methyl-4,5-dihydro-1h-pyrimidine-4-carboxylic acid is found in Axinella verrucosa. (4s,6r)-6-[(4-bromo-1h-pyrrole-2-carbonyloxy)methyl]-6-methyl-4,5-dihydro-1h-pyrimidine-4-carboxylic acid was first documented in 2010 (PMID: 20714430). Based on a literature review a small amount of articles have been published on manzacidin A (PMID: 29353267) (PMID: 25504989) (PMID: 23350911) (PMID: 22113586).
Structure
Thumb
SynonymsNot Available
Chemical FormulaC12H14BrN3O4
Average Mass344.1650 Da
Monoisotopic Mass343.01677 Da
IUPAC Name(4S,6R)-6-[(4-bromo-1H-pyrrole-2-carbonyloxy)methyl]-6-methyl-1,4,5,6-tetrahydropyrimidine-4-carboxylic acid
Traditional Name(4S,6R)-6-[(4-bromo-1H-pyrrole-2-carbonyloxy)methyl]-6-methyl-4,5-dihydro-1H-pyrimidine-4-carboxylic acid
CAS Registry NumberNot Available
SMILES
C[C@]1(COC(=O)C2=CC(Br)=CN2)C[C@H](N=CN1)C(O)=O
InChI Identifier
InChI=1S/C12H14BrN3O4/c1-12(3-9(10(17)18)15-6-16-12)5-20-11(19)8-2-7(13)4-14-8/h2,4,6,9,14H,3,5H2,1H3,(H,15,16)(H,17,18)/t9-,12+/m0/s1
InChI KeyGIJXHAABQHRBTG-JOYOIKCWSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Axinella verrucosaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as alpha amino acids and derivatives. These are amino acids in which the amino group is attached to the carbon atom immediately adjacent to the carboxylate group (alpha carbon), or a derivative thereof.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentAlpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid or derivatives
  • Hydropyrimidine carboxylic acid derivative
  • Pyrrole-2-carboxylic acid or derivatives
  • Aryl bromide
  • Aryl halide
  • Dicarboxylic acid or derivatives
  • Hydropyrimidine
  • 1,4,5,6-tetrahydropyrimidine
  • Substituted pyrrole
  • Heteroaromatic compound
  • Pyrrole
  • Carboxylic acid ester
  • Amidine
  • Formamidine
  • Carboxylic acid amidine
  • Carboxylic acid
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Carboximidamide
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Carbonyl group
  • Organohalogen compound
  • Organobromide
  • Organonitrogen compound
  • Organooxygen compound
  • Organopnictogen compound
  • Organic nitrogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.66ChemAxon
pKa (Strongest Acidic)2.13ChemAxon
pKa (Strongest Basic)8.58ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area103.78 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity73.23 m³·mol⁻¹ChemAxon
Polarizability29.31 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID156042
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound179267
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Hamed ANE, Schmitz R, Bergermann A, Totzke F, Kubbutat M, Muller WEG, Youssef DTA, Bishr MM, Kamel MS, Edrada-Ebel R, Watjen W, Proksch P: Bioactive pyrrole alkaloids isolated from the Red Sea: marine sponge Stylissa carteri. Z Naturforsch C J Biosci. 2018 Apr 25;73(5-6):199-210. doi: 10.1515/znc-2017-0161. [PubMed:29353267 ]
  2. Nagatomo M, Nishiyama H, Fujino H, Inoue M: Decarbonylative radical coupling of alpha-aminoacyl tellurides: single-step preparation of gamma-amino and alpha,beta-diamino acids and rapid synthesis of gabapentin and manzacidin A. Angew Chem Int Ed Engl. 2015 Jan 26;54(5):1537-41. doi: 10.1002/anie.201410186. Epub 2014 Dec 10. [PubMed:25504989 ]
  3. Yoshimura T, Kinoshita T, Yoshioka H, Kawabata T: Asymmetric intermolecular conjugate addition of amino acid derivatives via memory of chirality: total synthesis of manzacidin A. Org Lett. 2013 Feb 15;15(4):864-7. doi: 10.1021/ol303568f. Epub 2013 Jan 25. [PubMed:23350911 ]
  4. Ichikawa Y, Okumura K, Matsuda Y, Hasegawa T, Nakamura M, Fujimoto A, Masuda T, Nakano K, Kotsuki H: Synthesis of manzacidin A and C: efficient construction of quaternary carbon stereocenters bearing nitrogen substituents. Org Biomol Chem. 2012 Jan 21;10(3):614-22. doi: 10.1039/c1ob06559a. Epub 2011 Nov 24. [PubMed:22113586 ]
  5. Scala F, Fattorusso E, Menna M, Taglialatela-Scafati O, Tierney M, Kaiser M, Tasdemir D: Bromopyrrole alkaloids as lead compounds against protozoan parasites. Mar Drugs. 2010 Jul 14;8(7):2162-74. doi: 10.3390/md8072162. [PubMed:20714430 ]
  6. LOTUS database [Link]