NP-MRD: Showing NP-Card for 2-oxochromen-6-yl 3,4-dihydroxybenzoate (NP0259823)

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Record Information

Version

2.0

Created at

2022-09-08 01:49:17 UTC

Updated at

2022-09-08 01:49:18 UTC

NP-MRD ID

NP0259823

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-oxochromen-6-yl 3,4-dihydroxybenzoate

Description

2-Oxo-2H-chromen-6-yl 3,4-dihydroxybenzoate belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one). 2-oxochromen-6-yl 3,4-dihydroxybenzoate is found in Amburana cearensis. Based on a literature review very few articles have been published on 2-oxo-2H-chromen-6-yl 3,4-dihydroxybenzoate.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 34  0  0  0  0  0  0  0  0999 V2000
   -0.4964   -0.6242   -1.5681 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0148   -0.0742   -0.5631 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1369    0.5611    0.3072 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2323    0.6011    0.1034 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7468    1.6504   -0.6193 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0850    1.7996   -0.8874 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9361    0.8215   -0.3875 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2092    0.9214   -0.6162 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0448    0.0412   -0.1754 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2778    0.1761   -0.4207 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6417   -1.0557    0.5625 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2975   -1.1907    0.8225 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4372   -0.2415    0.3418 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0758   -0.3662    0.5975 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4569   -0.1026   -0.3259 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0318    0.4971    0.7718 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4013    0.4681    0.9938 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2343   -0.1744    0.1029 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6280   -0.2219    0.2993 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6779   -0.7836   -1.0066 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4730   -1.4348   -1.9193 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2994   -0.7403   -1.2069 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0806    2.4109   -1.0074 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4487    2.6353   -1.4569 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3411   -1.7898    0.9298 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9449   -2.0160    1.3841 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7175   -1.2140    1.1740 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3693    1.0009    1.4684 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8584    0.9362    1.8522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0579    0.2070    1.0881 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4694   -1.4683   -1.7781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9114   -1.2298   -2.0869 H   0  0  0  0  0  0  0  0  0  0  0  0
 19 18  1  0
 18 17  2  0
 17 16  1  0
 16 15  2  0
 15 22  1  0
 22 20  2  0
 20 21  1  0
 15  2  1  0
  2  1  2  0
  2  3  1  0
  3  4  1  0
  4  5  2  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  2  0
  9 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 20 18  1  0
 14  4  1  0
 13  7  1  0
 19 30  1  0
 17 29  1  0
 16 28  1  0
 22 32  1  0
 21 31  1  0
  5 23  1  0
  6 24  1  0
 11 25  1  0
 12 26  1  0
 14 27  1  0
M  END


  Mrv1652309082203492D          

 22 24  0  0  0  0            999 V2000
    0.7145   -2.8875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
  7 13  1  0  0  0  0
 13 14  2  0  0  0  0
  4 14  1  0  0  0  0
  2 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 18 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 22  2  0  0  0  0
 15 22  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0259823

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OC1=CC=C(C=C1O)C(=O)OC1=CC=C2OC(=O)C=CC2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C16H10O6/c17-12-4-1-10(8-13(12)18)16(20)21-11-3-5-14-9(7-11)2-6-15(19)22-14/h1-8,17-18H

> <INCHI_KEY>
GDGVYVSUXPSLIZ-UHFFFAOYSA-N

> <FORMULA>
C16H10O6

> <MOLECULAR_WEIGHT>
298.25

> <EXACT_MASS>
298.047738042

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
29.06136212847653

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-oxo-2H-chromen-6-yl 3,4-dihydroxybenzoate

> <JCHEM_LOGP>
2.8376643846666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.14516999696943

> <JCHEM_PKA_STRONGEST_ACIDIC>
8.518516648332234

> <JCHEM_PKA_STRONGEST_BASIC>
-5.842025306731071

> <JCHEM_POLAR_SURFACE_AREA>
93.06

> <JCHEM_REFRACTIVITY>
77.3133

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2-oxochromen-6-yl 3,4-dihydroxybenzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  O   UNK     0       1.334  -5.390   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       0.000  -3.080   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       5.335   0.000   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       8.002  -0.000   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.335  -3.080   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -5.335  -7.700   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -5.335  -4.620   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   15                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   14                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   13                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12    7   14                                                  
CONECT   14   13    4                                                       
CONECT   15    2   16   22                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   15                                                       
MASTER        0    0    0    0    0    0    0    0   22    0   48    0
END

View in JSmol

Synonyms

Value	Source
2-oxo-2H-Chromen-6-yl 3,4-dihydroxybenzoic acid	Generator

Chemical Formula

C₁₆H₁₀O₆

Average Mass

298.2500 Da

Monoisotopic Mass

298.04774 Da

IUPAC Name

2-oxo-2H-chromen-6-yl 3,4-dihydroxybenzoate

Traditional Name

2-oxochromen-6-yl 3,4-dihydroxybenzoate

CAS Registry Number

Not Available

SMILES

OC1=CC=C(C=C1O)C(=O)OC1=CC=C2OC(=O)C=CC2=C1

InChI Identifier

InChI=1S/C16H10O6/c17-12-4-1-10(8-13(12)18)16(20)21-11-3-5-14-9(7-11)2-6-15(19)22-14/h1-8,17-18H

InChI Key

GDGVYVSUXPSLIZ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Amburana cearensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumarins and derivatives. These are polycyclic aromatic compounds containing a 1-benzopyran moiety with a ketone group at the C2 carbon atom (1-benzopyran-2-one).

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Not Available

Direct Parent

Coumarins and derivatives

Alternative Parents

Substituents

M-hydroxybenzoic acid ester
P-hydroxybenzoic acid ester
Dihydroxybenzoic acid
Coumarin
Benzoate ester
Benzopyran
1-benzopyran
Benzoic acid or derivatives
Benzoyl
Catechol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
Pyranone
Pyran
Benzenoid
Monocyclic benzene moiety
Heteroaromatic compound
Carboxylic acid ester
Lactone
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Carboxylic acid derivative
Oxacycle
Organooxygen compound
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.84	ChemAxon
pKa (Strongest Acidic)	8.52	ChemAxon
pKa (Strongest Basic)	-5.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	93.06 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	77.31 m³·mol⁻¹	ChemAxon
Polarizability	29.06 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162916908

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-oxochromen-6-yl 3,4-dihydroxybenzoate (NP0259823)

MOL for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

3D MOL for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

3D SDF for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

3D-SDF for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

PDB for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

3D PDB for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

SMILES for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

INCHI for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

Structure for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)

3D Structure for NP0259823 (2-oxochromen-6-yl 3,4-dihydroxybenzoate)