NP-MRD: Showing NP-Card for (3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one (NP0259506)

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Record Information

Version

2.0

Created at

2022-09-08 01:24:14 UTC

Updated at

2022-09-08 01:24:14 UTC

NP-MRD ID

NP0259506

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one

Description

Lignarenone B belongs to the class of organic compounds known as styrenes. These are organic compounds containing an ethenylbenzene moiety. (3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one is found in Scaphander lignarius. Based on a literature review very few articles have been published on Lignarenone B.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 32 32  0  0  0  0  0  0  0  0999 V2000
    6.1123    1.0230    0.2630 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9668    0.3094    0.8770 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1742   -0.4524    1.8567 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6419    0.5213    0.3172 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4531    1.4264   -0.8340 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6375   -0.1307    0.8878 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2890    0.0453    0.3666 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2627   -0.5750    0.8933 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0737   -0.3520    0.3174 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1225   -0.9485    0.8101 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4646   -0.7856    0.3063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5422   -1.4538    0.8805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8174   -1.3135    0.4195 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1085   -0.5039   -0.6380 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0760    0.1749   -1.2353 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7612    0.0290   -0.7586 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0073    0.9589    0.9328 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8361    2.0815    0.1287 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3762    0.5056   -0.6785 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7896    1.0027   -1.6191 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4559    1.6145   -1.3063 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0915    2.4280   -0.5085 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7830   -0.7839    1.7205 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1145    0.7140   -0.4918 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4025   -1.2416    1.7413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1727    0.3119   -0.5179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9618   -1.6134    1.6606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3239   -2.0996    1.7208 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5966   -1.8833    0.9408 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1232   -0.4140   -0.9781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2768    0.8204   -2.0713 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9727    0.5846   -1.2603 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  2  4  1  0
  4  5  1  0
  4  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 11  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  5 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  7 24  1  0
  8 25  1  0
  9 26  1  0
 10 27  1  0
 12 28  1  0
 13 29  1  0
 14 30  1  0
 15 31  1  0
 16 32  1  0
M  END


  Mrv1652309082203242D          

 16 16  0  0  0  0            999 V2000
   -2.1434    6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    5.7750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0259506

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)C(\C)=C\C=C\C=C\C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H16O/c1-13(14(2)16)9-5-3-6-10-15-11-7-4-8-12-15/h3-12H,1-2H3/b5-3+,10-6+,13-9+

> <INCHI_KEY>
DLEPTASFXXJVDU-XVZDYSDNSA-N

> <FORMULA>
C15H16O

> <MOLECULAR_WEIGHT>
212.292

> <EXACT_MASS>
212.120115135

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
32

> <JCHEM_AVERAGE_POLARIZABILITY>
25.690407869463375

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3E,5E,7E)-3-methyl-8-phenylocta-3,5,7-trien-2-one

> <JCHEM_LOGP>
3.915693618666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.60122486900659

> <JCHEM_PKA_STRONGEST_BASIC>
-4.521889065150555

> <JCHEM_POLAR_SURFACE_AREA>
17.07

> <JCHEM_REFRACTIVITY>
71.60530000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3E,5E,7E)-3-methyl-8-phenylocta-3,5,7-trien-2-one

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.001  11.550   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.667  10.780   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -1.334  11.550   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -2.667   9.240   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.001   8.470   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334   8.470   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334   6.930   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   6.160   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11                                                       
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Value	Source
3-Methyl-8-phenyl-(e,e,e)-3,5,7-octatrien-2-one	MeSH
3-Methyl-8-phenyl-3,5,7-octatrien-2-one	MeSH
Lignarenone a OF lignarenone b	MeSH

Chemical Formula

C₁₅H₁₆O

Average Mass

212.2920 Da

Monoisotopic Mass

212.12012 Da

IUPAC Name

(3E,5E,7E)-3-methyl-8-phenylocta-3,5,7-trien-2-one

Traditional Name

(3E,5E,7E)-3-methyl-8-phenylocta-3,5,7-trien-2-one

CAS Registry Number

Not Available

SMILES

CC(=O)C(\C)=C\C=C\C=C\C1=CC=CC=C1

InChI Identifier

InChI=1S/C15H16O/c1-13(14(2)16)9-5-3-6-10-15-11-7-4-8-12-15/h3-12H,1-2H3/b5-3+,10-6+,13-9+

InChI Key

DLEPTASFXXJVDU-XVZDYSDNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Scaphander lignarius	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as styrenes. These are organic compounds containing an ethenylbenzene moiety.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Styrenes

Direct Parent

Styrenes

Alternative Parents

Substituents

Styrene
Alpha-branched alpha,beta-unsaturated-ketone
Alpha,beta-unsaturated ketone
Enone
Acryloyl-group
Ketone
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.92	ChemAxon
pKa (Strongest Acidic)	19.6	ChemAxon
pKa (Strongest Basic)	-4.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	17.07 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	71.61 m³·mol⁻¹	ChemAxon
Polarizability	25.69 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4943625

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6439196

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one (NP0259506)

MOL for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

3D MOL for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

3D SDF for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

3D-SDF for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

PDB for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

3D PDB for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

SMILES for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

INCHI for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

Structure for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)

3D Structure for NP0259506 ((3e,5e,7e)-3-methyl-8-phenylocta-3,5,7-trien-2-one)