NP-MRD: Showing NP-Card for (1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate (NP0259325)

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Record Information

Version

2.0

Created at

2022-09-08 01:09:41 UTC

Updated at

2022-09-08 01:09:41 UTC

NP-MRD ID

NP0259325

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

Description

7-Epi-Neovibsanin D belongs to the class of organic compounds known as furofurans. These are organic compounds containing a two furan rings fused to each other. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom. (1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate was first documented in 2005 (PMID: 15635234). Based on a literature review very few articles have been published on 7-epi-Neovibsanin D.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082203092D          

 33 35  0  0  1  0            999 V2000
   -0.2684   -0.5281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3327   -1.0932    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1226   -0.8551    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2768   -1.6655    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8032   -0.0944    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4280    0.4444    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.6167    1.2475    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4389    1.3162    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7582    0.5555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5372    0.2839    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  9 32  1  0  0  0  0
  6 32  1  0  0  0  0
 32 33  1  6  0  0  0
  3 33  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309082203092D          

 33 35  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0259325

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@]1(C)C[C@@H]2OCC3=CC[C@](C)(C\C=C\C(C)(C)OO)[C@@H](\C=C\OC(=O)C=C(C)C)[C@@]23O1

> <INCHI_IDENTIFIER>
InChI=1S/C26H38O7/c1-18(2)15-22(27)30-14-10-20-24(5,12-8-11-23(3,4)33-28)13-9-19-17-31-21-16-25(6,29-7)32-26(19,20)21/h8-11,14-15,20-21,28H,12-13,16-17H2,1-7H3/b11-8+,14-10+/t20-,21+,24+,25+,26-/m1/s1

> <INCHI_KEY>
DIEFFKCJCDUOGU-WLQATPCVSA-N

> <FORMULA>
C26H38O7

> <MOLECULAR_WEIGHT>
462.583

> <EXACT_MASS>
462.261753564

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
50.221423284058325

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(E)-2-[(1S,3S,5S,11S,12R)-11-[(2E)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0^{1,5}]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

> <JCHEM_LOGP>
4.631433099333331

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.700085352576936

> <JCHEM_PKA_STRONGEST_BASIC>
-3.8040672029782496

> <JCHEM_POLAR_SURFACE_AREA>
83.45

> <JCHEM_REFRACTIVITY>
127.64799999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
9

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(E)-2-[(1S,3S,5S,11S,12R)-11-[(2E)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0^{1,5}]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.501  -0.986   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       0.621  -2.041   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       2.096  -1.596   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.383  -3.109   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.499  -0.176   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.666   0.830   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       3.018   2.329   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       4.553   2.457   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.149   1.037   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.603   0.530   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.891  -0.983   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.725  -1.989   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       6.917  -2.963   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       4.973  -3.333   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.761  -4.656   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.009  -6.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.797  -7.323   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.120  -6.535   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.473  -8.111   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       6.585  -8.646   0.000  0.00  0.00           O+0
HETATM   21  O   UNK     0       5.833  -9.990   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       4.270  -1.482   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.104  -2.487   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.392  -4.000   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       2.226  -5.006   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       0.772  -4.499   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       0.484  -2.986   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0      -0.395  -5.505   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      -1.849  -4.998   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      -3.015  -6.003   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -2.137  -3.485   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.982   0.031   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       3.630  -1.468   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5   33                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   32                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   32                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   22                                             
CONECT   13   12                                                            
CONECT   14   12   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19   20                                             
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20   17   21                                                       
CONECT   21   20                                                            
CONECT   22   12   23   32                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29                                                            
CONECT   32   22    9    6   33                                             
CONECT   33   32    3                                                       
MASTER        0    0    0    0    0    0    0    0   33    0   70    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₃₈O₇

Average Mass

462.5830 Da

Monoisotopic Mass

462.26175 Da

IUPAC Name

(E)-2-[(1S,3S,5S,11S,12R)-11-[(2E)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0^{1,5}]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

Traditional Name

(E)-2-[(1S,3S,5S,11S,12R)-11-[(2E)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0^{1,5}]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate

CAS Registry Number

Not Available

SMILES

CO[C@]1(C)C[C@@H]2OCC3=CC[C@](C)(C\C=C\C(C)(C)OO)[C@@H](\C=C\OC(=O)C=C(C)C)[C@@]23O1

InChI Identifier

InChI=1S/C26H38O7/c1-18(2)15-22(27)30-14-10-20-24(5,12-8-11-23(3,4)33-28)13-9-19-17-31-21-16-25(6,29-7)32-26(19,20)21/h8-11,14-15,20-21,28H,12-13,16-17H2,1-7H3/b11-8+,14-10+/t20-,21+,24+,25+,26-/m1/s1

InChI Key

DIEFFKCJCDUOGU-WLQATPCVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as furofurans. These are organic compounds containing a two furan rings fused to each other. Furan is a five-membered aromatic ring with four carbon atoms and one oxygen atom.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Furofurans

Sub Class

Not Available

Direct Parent

Furofurans

Alternative Parents

Substituents

Furofuran
Fatty acid ester
Ketal
Monosaccharide
Fatty acyl
Enol ester
Oxolane
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Hydroperoxide
Carboxylic acid ester
Peroxol
Monocarboxylic acid or derivatives
Alkyl hydroperoxide
Ether
Acetal
Dialkyl ether
Carboxylic acid derivative
Oxacycle
Organooxygen compound
Organic oxide
Organic oxygen compound
Carbonyl group
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.63	ChemAxon
pKa (Strongest Acidic)	11.7	ChemAxon
pKa (Strongest Basic)	-3.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	83.45 Å²	ChemAxon
Rotatable Bond Count	9	ChemAxon
Refractivity	127.65 m³·mol⁻¹	ChemAxon
Polarizability	50.22 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00035973

Chemspider ID

9560610

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11385697

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Fukuyama Y, Kubo M, Minami H, Yuasa H, Matsuo A, Fujii T, Morisaki M, Harada K: Rearranged vibsane-type diterpenes from Viburnum awabuki and photochemical reaction of vibsanin B. Chem Pharm Bull (Tokyo). 2005 Jan;53(1):72-80. doi: 10.1248/cpb.53.72. [PubMed:15635234 ]
LOTUS database [Link]

Showing NP-Card for (1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate (NP0259325)

MOL for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D MOL for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D SDF for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D-SDF for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

PDB for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D PDB for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

SMILES for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

INCHI for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

Structure for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)

3D Structure for NP0259325 ((1e)-2-[(1s,3s,5s,11s,12r)-11-[(2e)-4-hydroperoxy-4-methylpent-2-en-1-yl]-3-methoxy-3,11-dimethyl-2,6-dioxatricyclo[6.4.0.0¹,⁵]dodec-8-en-12-yl]ethenyl 3-methylbut-2-enoate)