NP-MRD: Showing NP-Card for [(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate (NP0257801)

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Record Information

Version

2.0

Created at

2022-09-07 23:01:49 UTC

Updated at

2022-09-07 23:01:49 UTC

NP-MRD ID

NP0257801

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate

Description

Patridoid II belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid. [(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate is found in Patrinia saniculifolia. [(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate was first documented in 2003 (PMID: 14648401). Based on a literature review very few articles have been published on Patridoid II (PMID: 12736460).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082201012D          

 30 31  0  0  1  0            999 V2000
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8860    2.0445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3340    2.6576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5889    3.4422    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7065    2.1307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0420    1.3770    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8490    1.2055    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4010    1.8186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  5 13  1  0  0  0  0
 13 14  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 13 21  1  0  0  0  0
 21 22  2  0  0  0  0
  3 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
M  END

     RDKit          3D

 64 65  0  0  0  0  0  0  0  0999 V2000
    0.8050   -2.3412    1.4143 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3728   -1.1602    0.8730 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3880   -1.1209   -0.5178 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.9484   -1.1252   -0.9062 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6301    0.0764   -0.7410 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8911   -0.2389   -0.2442 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9864   -0.1615   -1.0805 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7871    0.1861   -2.2786 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3744   -0.4537   -0.6838 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4643   -1.9322   -0.3503 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5045   -2.2049    0.7957 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8757   -2.2917    0.1110 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8401    1.0964    0.0201 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3878    2.4665   -0.0651 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7165    2.9083    0.4607 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9177    4.2613    0.2304 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5657    3.3121   -0.6622 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7022    2.6449   -1.1009 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7874    3.2141   -0.4221 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6577    3.8258   -1.3107 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4503    1.2465   -0.7934 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0355    0.0712   -1.0898 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1917    0.0355   -1.9875 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3981   -0.4523   -1.5465 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2012   -0.0245   -0.5249 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7611    0.9652    0.1399 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4930   -0.5673   -0.1213 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5478   -1.3206    1.1580 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6734   -2.5274    1.1927 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3539   -0.4332    2.3845 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8166   -2.6220    1.1495 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7680   -2.2206    2.5401 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0580   -3.1206    1.1520 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8135   -2.0765   -0.9276 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7626    0.4548   -1.8024 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0558   -0.2688   -1.5542 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7623    0.1771    0.1348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2027   -2.5745   -1.2058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9528   -2.9634    1.4558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4099   -1.2451    1.3754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5184   -2.4620    0.4002 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6084   -2.0415   -0.6552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0889   -1.7743    1.0937 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9204   -3.3723    0.3518 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6337    0.8685    1.0603 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7251    2.7815    1.5658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5691    2.3781    0.0381 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4757    4.3808   -0.5870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7107    4.3863   -0.8552 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8367    2.8118   -2.1819 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1127    4.6332   -1.8763 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1336    3.1780   -2.0394 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4740    4.3643   -0.7735 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9007   -0.6446   -2.8727 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2988    1.0289   -2.5381 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2578    0.2645   -0.0252 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9561   -1.2262   -0.9090 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6138   -1.6889    1.2601 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0797   -2.5341    2.1255 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0397   -2.6295    0.2789 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2676   -3.4896    1.2087 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9834    0.4576    2.2678 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2871   -0.1721    2.5457 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7693   -0.9932    3.2606 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 19  1  0
 19 18  1  0
 18 17  1  0
 17 14  2  0
 14 15  1  0
 15 16  1  0
 14 13  1  0
 13  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  1  0
  3 22  1  0
 22 23  1  0
 23 24  1  0
 24 25  1  0
 25 26  2  0
 25 27  1  0
 27 28  1  0
 28 29  1  0
 28 30  1  0
 22 21  2  0
 21 18  1  0
 21 13  1  0
 20 51  1  0
 20 52  1  0
 20 53  1  0
 18 50  1  6
 17 49  1  0
 15 46  1  0
 15 47  1  0
 16 48  1  0
 13 45  1  1
  5 35  1  6
  9 36  1  0
  9 37  1  0
 10 38  1  0
 11 39  1  0
 11 40  1  0
 11 41  1  0
 12 42  1  0
 12 43  1  0
 12 44  1  0
  3 34  1  6
  1 31  1  0
  1 32  1  0
  1 33  1  0
 23 54  1  0
 23 55  1  0
 27 56  1  0
 27 57  1  0
 28 58  1  0
 29 59  1  0
 29 60  1  0
 29 61  1  0
 30 62  1  0
 30 63  1  0
 30 64  1  0
M  END


  Mrv1652309082201012D          

 30 31  0  0  1  0            999 V2000
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8860    2.0445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3340    2.6576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5889    3.4422    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7065    2.1307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0420    1.3770    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8490    1.2055    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4010    1.8186    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 10 12  1  0  0  0  0
  5 13  1  0  0  0  0
 13 14  1  6  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 13 21  1  0  0  0  0
 21 22  2  0  0  0  0
  3 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0257801

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO[C@@H]1C=C(CO)[C@H]2[C@H](OC(=O)CC(C)C)O[C@H](OC)C(COC(=O)CC(C)C)=C12

> <INCHI_IDENTIFIER>
InChI=1S/C22H34O8/c1-12(2)7-17(24)28-11-15-20-16(26-5)9-14(10-23)19(20)22(30-21(15)27-6)29-18(25)8-13(3)4/h9,12-13,16,19,21-23H,7-8,10-11H2,1-6H3/t16-,19-,21+,22-/m1/s1

> <INCHI_KEY>
LERLQQKAXDNEKW-ZKMOHVOUSA-N

> <FORMULA>
C22H34O8

> <MOLECULAR_WEIGHT>
426.506

> <EXACT_MASS>
426.225368055

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
64

> <JCHEM_AVERAGE_POLARIZABILITY>
46.36529039252726

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[(1S,3S,5R,7aR)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1H,3H,5H,7aH-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate

> <JCHEM_LOGP>
2.036385624999999

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.120687867450915

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7460111267769705

> <JCHEM_POLAR_SURFACE_AREA>
100.52000000000001

> <JCHEM_REFRACTIVITY>
109.73439999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
[(1S,3S,5R,7aR)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1H,3H,5H,7aH-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -1.334   2.310   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      -4.001   2.310   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.001  -2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.335   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.654   3.816   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       0.623   4.961   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       1.099   6.425   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0       3.185   3.977   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.812   2.570   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.318   2.250   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.349   3.395   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       5.335   0.000   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       6.668  -2.310   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      10.669   0.000   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       9.336  -2.310   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   22                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   13                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    5   14   21                                                  
CONECT   14   13   15   17                                                  
CONECT   15   14   16                                                       
CONECT   16   15                                                            
CONECT   17   14   18                                                       
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   13   22                                                  
CONECT   22   21    3   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28                                                            
MASTER        0    0    0    0    0    0    0    0   30    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₃₄O₈

Average Mass

426.5060 Da

Monoisotopic Mass

426.22537 Da

IUPAC Name

[(1S,3S,5R,7aR)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1H,3H,5H,7aH-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate

Traditional Name

[(1S,3S,5R,7aR)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1H,3H,5H,7aH-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate

CAS Registry Number

Not Available

SMILES

CO[C@@H]1C=C(CO)[C@H]2[C@H](OC(=O)CC(C)C)O[C@H](OC)C(COC(=O)CC(C)C)=C12

InChI Identifier

InChI=1S/C22H34O8/c1-12(2)7-17(24)28-11-15-20-16(26-5)9-14(10-23)19(20)22(30-21(15)27-6)29-18(25)8-13(3)4/h9,12-13,16,19,21-23H,7-8,10-11H2,1-6H3/t16-,19-,21+,22-/m1/s1

InChI Key

LERLQQKAXDNEKW-ZKMOHVOUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Patrinia saniculaefolia	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as fatty acid esters. These are carboxylic ester derivatives of a fatty acid.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty acid esters

Direct Parent

Fatty acid esters

Alternative Parents

Substituents

Fatty acid ester
Dicarboxylic acid or derivatives
Pyran
Carboxylic acid ester
Acetal
Carboxylic acid derivative
Dialkyl ether
Ether
Oxacycle
Organoheterocyclic compound
Organic oxide
Carbonyl group
Hydrocarbon derivative
Organooxygen compound
Primary alcohol
Alcohol
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.04	ChemAxon
pKa (Strongest Acidic)	15.12	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	100.52 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	109.73 m³·mol⁻¹	ChemAxon
Polarizability	46.37 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00032116

Chemspider ID

9147177

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10971969

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Ju HK, Moon TC, Lee E, Baek SH, An RB, Bae K, Son KH, Kim HP, Kang SS, Lee SH, Son JK, Chang HW: Inhibitory effects of a new iridoid, patridoid II and its isomers, on nitric oxide and TNF-alpha production in cultured murine macrophages. Planta Med. 2003 Oct;69(10):950-3. doi: 10.1055/s-2003-45107. [PubMed:14648401 ]
An RB, Min BS, Na MK, Chang HW, Son KH, Kim HP, Lee HK, Bae K, Kang SS: Iridoid esters from Patrinia saniculaefolia. Chem Pharm Bull (Tokyo). 2003 May;51(5):583-5. doi: 10.1248/cpb.51.583. [PubMed:12736460 ]
LOTUS database [Link]

Showing NP-Card for [(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate (NP0257801)

MOL for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

3D MOL for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

3D SDF for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

3D-SDF for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

PDB for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

3D PDB for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

SMILES for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

INCHI for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

Structure for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)

3D Structure for NP0257801 ([(1s,3s,5r,7ar)-7-(hydroxymethyl)-3,5-dimethoxy-1-[(3-methylbutanoyl)oxy]-1h,3h,5h,7ah-cyclopenta[c]pyran-4-yl]methyl 3-methylbutanoate)