NP-MRD: Showing NP-Card for 15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate (NP0257207)

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Record Information

Version

2.0

Created at

2022-09-07 22:15:58 UTC

Updated at

2022-09-07 22:15:59 UTC

NP-MRD ID

NP0257207

Secondary Accession Numbers

None

Natural Product Identification

Common Name

15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate

Description

Crambescidin 816 belongs to the class of organic compounds known as n-acyl amines. N-acyl amines are compounds containing a fatty acid moiety linked to an amine group through an ester linkage. 15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate is found in Crambe crambe. 15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate was first documented in 2013 (PMID: 23270282). Based on a literature review a small amount of articles have been published on Crambescidin 816 (PMID: 28375602) (PMID: 27825113).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309082200162D          

 58 62  0  0  0  0            999 V2000
   -4.9270    5.2159    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1784    4.8691    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5038    5.3440    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6390    6.1579    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0869    6.7710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2634    6.7216    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7885    6.0470    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0199    5.2551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2353    5.5101    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6222    4.9580    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1983    5.0443    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5339    4.2906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0792    3.7386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6745    3.4030    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0792    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6353    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6353    1.6761    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3497    2.9136    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0642    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7787    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4931    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2076    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9221    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6366    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3510    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0655    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7800    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4944    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2089    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9234    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.6378    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3523    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0668    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7813    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7813    3.7386    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.4957    2.5011    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.4957    1.6761    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2102    1.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2102    0.4386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4957    0.0261    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   14.2102    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9247    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.9247    1.6761    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   15.6391    2.9136    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.3536    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.0681    2.9136    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7937    2.5011    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0792    2.0886    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0792    1.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7937    0.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5082    1.2636    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2226    0.8511    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5082    2.0886    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5082    2.9136    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5783    3.8961    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1914    4.4481    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7937    4.1511    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7833    4.9423    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 36 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 42 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  1  0  0  0  0
 15 47  1  0  0  0  0
 47 48  1  0  0  0  0
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 51 52  1  0  0  0  0
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 47 53  1  0  0  0  0
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 54 55  1  0  0  0  0
 55 56  2  0  0  0  0
  8 56  1  0  0  0  0
 55 57  1  0  0  0  0
 10 57  1  0  0  0  0
 13 57  1  0  0  0  0
  8 58  1  0  0  0  0
  3 58  1  0  0  0  0
M  END

     RDKit          3D

138142  0  0  0  0  0  0  0  0999 V2000
  -10.7491    2.4382    3.3357 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5515    1.9583    2.1708 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -11.0498    0.7771   -1.2836 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8024    1.1398   -1.9424 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1344    2.3876   -1.4386 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6952    2.1981    0.0305 C   0  0  2  0  0  0  0  0  0  0  0  0
   -7.5378    3.0959    0.2312 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2678    2.4408    0.6846 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0766    2.8955   -0.1691 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3654    1.6286   -0.6136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8709    0.5835    0.3604 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1800    0.6056    1.5436 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9847   -0.7913   -0.2726 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.7041   -1.3283   -0.7656 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0975   -2.2837   -0.2126 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0730   -0.8404   -1.8516 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0005   -0.9840   -2.5925 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6055   -0.7523   -2.1962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0112   -1.5812   -1.1039 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0504   -3.0275   -1.4038 C   0  0  0  0  0  0  0  0  0  0  0  0
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   11.9832    4.1549    4.2441 N   0  0  0  0  0  0  0  0  0  0  0  0
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    9.7071   -2.7517   -0.3658 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


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M  END
> <DATABASE_ID>
NP0257207

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC1OC2(CC3CCC4(O)C(C(=O)OCCCCCCCCCCCCCCCC(=O)N(CCCN)CC(O)CCN)C5(CCCC(C)O5)NC(=N2)N34)CCC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C45H80N6O7/c1-3-38-22-16-17-26-43(58-38)33-36-24-28-45(55)40(44(27-19-21-35(2)57-44)49-42(48-43)51(36)45)41(54)56-32-18-14-12-10-8-6-4-5-7-9-11-13-15-23-39(53)50(31-20-29-46)34-37(52)25-30-47/h16,22,35-38,40,52,55H,3-15,17-21,23-34,46-47H2,1-2H3,(H,48,49)

> <INCHI_KEY>
DFDTZECTHJFPHE-UHFFFAOYSA-N

> <FORMULA>
C45H80N6O7

> <MOLECULAR_WEIGHT>
817.17

> <EXACT_MASS>
816.60884894

> <JCHEM_ACCEPTOR_COUNT>
11

> <JCHEM_ATOM_COUNT>
138

> <JCHEM_AVERAGE_POLARIZABILITY>
98.21918295945571

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''H-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0^{4,12}]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate

> <JCHEM_LOGP>
6.389921456

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
3

> <JCHEM_PKA>
14.83131242592982

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.508112630575486

> <JCHEM_PKA_STRONGEST_BASIC>
9.969758861636727

> <JCHEM_POLAR_SURFACE_AREA>
185.20000000000002

> <JCHEM_REFRACTIVITY>
228.9343

> <JCHEM_ROTATABLE_BOND_COUNT>
26

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''H-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0^{4,12}]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 08-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   08-SEP-22         0                                  
HETATM    1  C   UNK     0      -9.197   9.736   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -7.800   9.089   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -6.540   9.976   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -6.793  11.495   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -5.762  12.639   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -4.225  12.547   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -3.339  11.288   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -3.770   9.810   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.306  10.285   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -1.161   9.255   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.370   9.416   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.997   8.009   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.148   6.979   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       1.259   6.352   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0      -0.148   5.439   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.186   4.669   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       1.186   3.129   0.000  0.00  0.00           O+0
HETATM   18  O   UNK     0       2.519   5.439   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       3.853   4.669   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.187   5.439   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.521   4.669   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.854   5.439   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       9.188   4.669   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      10.522   5.439   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      11.855   4.669   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      13.189   5.439   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      14.523   4.669   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      15.856   5.439   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      17.190   4.669   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      18.524   5.439   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      19.857   4.669   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      21.191   5.439   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      22.525   4.669   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      23.858   5.439   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      23.858   6.979   0.000  0.00  0.00           O+0
HETATM   36  N   UNK     0      25.192   4.669   0.000  0.00  0.00           N+0
HETATM   37  C   UNK     0      25.192   3.129   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      26.526   2.359   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      26.526   0.819   0.000  0.00  0.00           C+0
HETATM   40  N   UNK     0      25.192   0.049   0.000  0.00  0.00           N+0
HETATM   41  C   UNK     0      26.526   5.439   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      27.859   4.669   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      27.859   3.129   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      29.193   5.439   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      30.527   4.669   0.000  0.00  0.00           C+0
HETATM   46  N   UNK     0      31.860   5.439   0.000  0.00  0.00           N+0
HETATM   47  C   UNK     0      -1.482   4.669   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      -0.148   3.899   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -0.148   2.359   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      -1.482   1.589   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      -2.815   2.359   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      -4.149   1.589   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0      -2.815   3.899   0.000  0.00  0.00           O+0
HETATM   54  N   UNK     0      -2.815   5.439   0.000  0.00  0.00           N+0
HETATM   55  C   UNK     0      -2.946   7.273   0.000  0.00  0.00           C+0
HETATM   56  N   UNK     0      -4.091   8.303   0.000  0.00  0.00           N+0
HETATM   57  N   UNK     0      -1.482   7.749   0.000  0.00  0.00           N+0
HETATM   58  O   UNK     0      -5.195   9.226   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   58                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   56   58                                             
CONECT    9    8   10                                                       
CONECT   10    9   11   57                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   57                                             
CONECT   14   13                                                            
CONECT   15   13   16   47                                                  
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37   41                                                  
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39                                                            
CONECT   41   36   42                                                       
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45                                                            
CONECT   47   15   48   53   54                                             
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52   53                                                  
CONECT   52   51                                                            
CONECT   53   51   47                                                       
CONECT   54   47   55                                                       
CONECT   55   54   56   57                                                  
CONECT   56   55    8                                                       
CONECT   57   55   10   13                                                  
CONECT   58    8    3                                                       
MASTER        0    0    0    0    0    0    0    0   58    0  124    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₄₅H₈₀N₆O₇

Average Mass

817.1700 Da

Monoisotopic Mass

816.60885 Da

IUPAC Name

15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''H-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0^{4,12}]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate

Traditional Name

CAS Registry Number

Not Available

SMILES

CCC1OC2(CC3CCC4(O)C(C(=O)OCCCCCCCCCCCCCCCC(=O)N(CCCN)CC(O)CCN)C5(CCCC(C)O5)NC(=N2)N34)CCC=C1

InChI Identifier

InChI=1S/C45H80N6O7/c1-3-38-22-16-17-26-43(58-38)33-36-24-28-45(55)40(44(27-19-21-35(2)57-44)49-42(48-43)51(36)45)41(54)56-32-18-14-12-10-8-6-4-5-7-9-11-13-15-23-39(53)50(31-20-29-46)34-37(52)25-30-47/h16,22,35-38,40,52,55H,3-15,17-21,23-34,46-47H2,1-2H3,(H,48,49)

InChI Key

DFDTZECTHJFPHE-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Crambe crambe	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as n-acyl amines. N-acyl amines are compounds containing a fatty acid moiety linked to an amine group through an ester linkage.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Fatty Acyls

Sub Class

Fatty amides

Direct Parent

N-acyl amines

Alternative Parents

Substituents

1,3-diazinane
Hydropyrimidine
1,4,5,6-tetrahydropyrimidine
N-acyl-amine
Oxane
1,3-aminoalcohol
Pyrrolidine
Tertiary carboxylic acid amide
Amino acid or derivatives
Carboxamide group
Carboxylic acid ester
Guanidine
Secondary alcohol
Alkanolamine
Carboxylic acid derivative
Oxacycle
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Carboximidamide
Organic nitrogen compound
Hydrocarbon derivative
Organic oxide
Amine
Primary aliphatic amine
Organic oxygen compound
Carbonyl group
Organonitrogen compound
Organooxygen compound
Organopnictogen compound
Primary amine
Alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.39	ChemAxon
pKa (Strongest Acidic)	12.51	ChemAxon
pKa (Strongest Basic)	9.97	ChemAxon
Physiological Charge	3	ChemAxon
Hydrogen Acceptor Count	11	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	185.2 Å²	ChemAxon
Rotatable Bond Count	26	ChemAxon
Refractivity	228.93 m³·mol⁻¹	ChemAxon
Polarizability	98.22 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

144119

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

164382

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Mendez AG, Juncal AB, Silva SBL, Thomas OP, Martin Vazquez V, Alfonso A, Vieytes MR, Vale C, Botana LM: The Marine Guanidine Alkaloid Crambescidin 816 Induces Calcium Influx and Cytotoxicity in Primary Cultures of Cortical Neurons through Glutamate Receptors. ACS Chem Neurosci. 2017 Jul 19;8(7):1609-1617. doi: 10.1021/acschemneuro.7b00096. Epub 2017 Apr 24. [PubMed:28375602 ]
Roel M, Rubiolo JA, Guerra-Varela J, Silva SB, Thomas OP, Cabezas-Sainz P, Sanchez L, Lopez R, Botana LM: Marine guanidine alkaloids crambescidins inhibit tumor growth and activate intrinsic apoptotic signaling inducing tumor regression in a colorectal carcinoma zebrafish xenograft model. Oncotarget. 2016 Dec 13;7(50):83071-83087. doi: 10.18632/oncotarget.13068. [PubMed:27825113 ]
Martin V, Vale C, Bondu S, Thomas OP, Vieytes MR, Botana LM: Differential effects of crambescins and crambescidin 816 in voltage-gated sodium, potassium and calcium channels in neurons. Chem Res Toxicol. 2013 Jan 18;26(1):169-78. doi: 10.1021/tx3004483. Epub 2013 Jan 9. [PubMed:23270282 ]
LOTUS database [Link]

Showing NP-Card for 15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate (NP0257207)

MOL for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

3D MOL for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

3D SDF for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

3D-SDF for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

PDB for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

3D PDB for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

SMILES for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

INCHI for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

Structure for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)

3D Structure for NP0257207 (15-[(4-amino-2-hydroxybutyl)(3-aminopropyl)carbamoyl]pentadecyl 7''-ethyl-4'-hydroxy-6-methyl-4'',7''-dihydro-3''h-dispiro[oxane-2,6'-[7,9,12]triazatricyclo[6.3.1.0⁴,¹²]dodecane-10',2''-oxepin]-8'-ene-5'-carboxylate)