NP-MRD: Showing NP-Card for 5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione (NP0256760)

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Record Information

Version

1.0

Created at

2022-09-07 21:41:30 UTC

Updated at

2022-09-07 21:41:30 UTC

NP-MRD ID

NP0256760

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione

Description

5-Heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione belongs to the class of organic compounds known as ubiquinones. These are coenzyme Q derivatives containing a 5, 6-dimethoxy-3-methyl(1,4-benzoquinone) moiety to which an isoprenyl group is attached at ring position 2(or 6). 5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione is found in Myrsine africana. It was first documented in 2021 (PMID: 34975464). Based on a literature review a significant number of articles have been published on 5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione (PMID: 35837172) (PMID: 35788500) (PMID: 35245619) (PMID: 35052956).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072223412D          

 27 27  0  0  0  0            999 V2000
    4.2868   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2894   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0039  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7184   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4328  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1473   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8618  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5762   -9.9000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.8618  -11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5762  -11.5500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.1473  -11.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1473  -12.3750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.4328  -11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7184  -11.5500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 18 26  1  0  0  0  0
 26 27  2  0  0  0  0
M  END

     RDKit          3D

 65 65  0  0  0  0  0  0  0  0999 V2000
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   -5.4904    0.5129    3.0653 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1262   -0.8919    2.6350 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -5.0396   -0.2873    0.2602 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.1505   -0.3802   -3.9130 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.4128   -0.3749   -2.8139 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3933    1.0706   -2.4545 C   0  0  0  0  0  0  0  0  0  0  0  0
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    3.9637    1.1441    0.0975 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6724    0.4868    1.2241 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7353   -0.2904    0.9891 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4358   -0.9387    2.0911 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4212   -1.6548    1.8310 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.0053   -0.7616    3.4582 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6802   -1.3825    4.4860 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9591    0.0013    3.7107 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5102    0.2009    5.0002 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2484    0.6589    2.5936 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2592    1.3768    2.8669 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3615    0.7454    3.5001 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1620    2.0551    2.4804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3933    1.9786    4.2642 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0683    0.4202    4.0088 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1898    0.9942    2.3290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0727   -1.4564    2.5501 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5792   -1.3491    3.4981 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3257   -0.4407    1.6067 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1108   -1.9792    1.1344 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9993   -0.8174    0.1332 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -4.8399    0.1099   -1.8719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0629   -1.3708   -1.2511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2995    0.0697   -0.1079 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.8865    0.9304   -3.0221 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3070    1.0336   -2.2397 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.4628   -1.5313   -1.8243 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8227   -0.6968   -4.7730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0016   -2.1529   -4.1294 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0812    0.7060   -3.8275 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6313   -0.5838   -4.9057 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1963   -2.0813   -3.0674 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5671   -0.8840   -1.8882 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8333   -0.4395   -3.8535 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1225   -0.9533   -2.1934 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4292    1.4852   -2.4914 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7767    1.6246   -3.2083 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7604    1.0591   -1.0830 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8485    2.4752   -0.9714 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9932    1.0000    0.9497 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4810   -0.3840   -0.0614 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.9869   -0.8447 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9849    2.2584    0.2691 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0762   -0.4381   -0.0240 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6981   -1.3621    4.4652 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8807   -0.3866    5.7402 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
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  1 28  1  0
  1 29  1  0
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  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
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 17 61  1  0
 17 62  1  0
 19 63  1  0
 23 64  1  0
 25 65  1  0
M  END


  Mrv1652309072223412D          

 27 27  0  0  0  0            999 V2000
    4.2868   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8605   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5749  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2894   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0039  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7184   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4328  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1473   -9.9000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8618  -10.3125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5762   -9.9000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.8618  -11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.5762  -11.5500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   17.1473  -11.5500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1473  -12.3750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.4328  -11.1375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7184  -11.5500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 24 25  1  0  0  0  0
 24 26  1  0  0  0  0
 18 26  1  0  0  0  0
 26 27  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0256760

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCCCCCCC1=CC(=O)C(O)=C(O)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C23H38O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-19-18-20(24)22(26)23(27)21(19)25/h18,26-27H,2-17H2,1H3

> <INCHI_KEY>
OQACHSQOSJXQFV-UHFFFAOYSA-N

> <FORMULA>
C23H38O4

> <MOLECULAR_WEIGHT>
378.553

> <EXACT_MASS>
378.277009704

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
65

> <JCHEM_AVERAGE_POLARIZABILITY>
47.469805713444245

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione

> <JCHEM_LOGP>
7.4954475779999985

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
10.812850304281591

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.509260551963592

> <JCHEM_PKA_STRONGEST_BASIC>
-5.1802906988056145

> <JCHEM_POLAR_SURFACE_AREA>
74.6

> <JCHEM_REFRACTIVITY>
112.93669999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       8.002 -18.480   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.336 -19.250   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.669 -18.480   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      12.003 -19.250   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      13.337 -18.480   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      14.670 -19.250   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      16.004 -18.480   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      17.338 -19.250   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      18.672 -18.480   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      20.005 -19.250   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      21.339 -18.480   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      22.673 -19.250   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      24.006 -18.480   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      25.340 -19.250   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      26.674 -18.480   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      28.007 -19.250   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      29.341 -18.480   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      30.675 -19.250   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      32.008 -18.480   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      33.342 -19.250   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      34.676 -18.480   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      33.342 -20.790   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      34.676 -21.560   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      32.008 -21.560   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      32.008 -23.100   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      30.675 -20.790   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      29.341 -21.560   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   26                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   18   27                                                  
CONECT   27   26                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₃H₃₈O₄

Average Mass

378.5530 Da

Monoisotopic Mass

378.27701 Da

IUPAC Name

5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione

Traditional Name

5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCCCCCC1=CC(=O)C(O)=C(O)C1=O

InChI Identifier

InChI=1S/C23H38O4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-19-18-20(24)22(26)23(27)21(19)25/h18,26-27H,2-17H2,1H3

InChI Key

OQACHSQOSJXQFV-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Myrsine africana	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as ubiquinones. These are coenzyme Q derivatives containing a 5, 6-dimethoxy-3-methyl(1,4-benzoquinone) moiety to which an isoprenyl group is attached at ring position 2(or 6).

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Quinone and hydroquinone lipids

Direct Parent

Ubiquinones

Alternative Parents

Substituents

Ubiquinone skeleton
Quinone
P-benzoquinone
Vinylogous acid
Cyclic ketone
Ketone
Enediol
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	7.5	ChemAxon
pKa (Strongest Acidic)	5.51	ChemAxon
pKa (Strongest Basic)	-5.2	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	74.6 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	112.94 m³·mol⁻¹	ChemAxon
Polarizability	47.47 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162929664

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

He Y, Li Y, Liang T, Mo S, Liao Y, Chen Z, Zhao S, Ran Q, Han C, Hoa PTT: Effects of 2-dodecyl-6-methoxycyclohexa-2,5-diene-1,4-dione on autophagy and the PI3K/AKT/mTOR signaling pathway in human cholangiocarcinoma QBC939 cells. J Gastrointest Oncol. 2022 Jun;13(3):1423-1432. doi: 10.21037/jgo-22-298. [PubMed:35837172 ]
Kachi-Terajima C, Inaba Y, Tsuruga K: Synthesis, crystal structure and determination of the pK(a) value of 2,6-dimethoxycyclohexa-2,5-diene-1,4-dione 1-[2-(quinolin-8-yl)hydrazone]. Acta Crystallogr C Struct Chem. 2022 Jul 1;78(Pt 7):371-375. doi: 10.1107/S2053229622005368. Epub 2022 Jun 7. [PubMed:35788500 ]
Hiki K, Yamamoto H: Concentration and leachability of N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine (6PPD) and its quinone transformation product (6PPD-Q) in road dust collected in Tokyo, Japan. Environ Pollut. 2022 Jun 1;302:119082. doi: 10.1016/j.envpol.2022.119082. Epub 2022 Mar 1. [PubMed:35245619 ]
Qureshi KA, Imtiaz M, Parvez A, Rai PK, Jaremko M, Emwas AH, Bholay AD, Fatmi MQ: In Vitro and In Silico Approaches for the Evaluation of Antimicrobial Activity, Time-Kill Kinetics, and Anti-Biofilm Potential of Thymoquinone (2-Methyl-5-propan-2-ylcyclohexa-2,5-diene-1,4-dione) against Selected Human Pathogens. Antibiotics (Basel). 2022 Jan 10;11(1):79. doi: 10.3390/antibiotics11010079. [PubMed:35052956 ]
Wang L, Cao J, Xu Q, Lu X, Yang X, Song Q, Chen S, Du K, Huang R, Zou C: 2-Dodecyl-6-Methoxycyclohexa-2,5-Diene-1,4-Dione Ameliorates Diabetic Cognitive Impairment Through Inhibiting Hif3alpha and Apoptosis. Front Pharmacol. 2021 Dec 16;12:708141. doi: 10.3389/fphar.2021.708141. eCollection 2021. [PubMed:34975464 ]
LOTUS database [Link]

Showing NP-Card for 5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione (NP0256760)

MOL for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

3D MOL for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

3D SDF for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

3D-SDF for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

PDB for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

3D PDB for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

SMILES for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

INCHI for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

Structure for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)

3D Structure for NP0256760 (5-heptadecyl-2,3-dihydroxycyclohexa-2,5-diene-1,4-dione)