NP-MRD: Showing NP-Card for 5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid (NP0256596)

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Record Information

Version

2.0

Created at

2022-09-07 21:28:51 UTC

Updated at

2022-09-07 21:28:51 UTC

NP-MRD ID

NP0256596

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid

Description

5-Hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylic acid belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety. 5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid is found in Chaenactis douglasii. 5-Hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL SDF PDB SMILES InChI


  Mrv1533004171515552D          

 27 28  0  0  0  0            999 V2000
    3.2897    3.0795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8125    2.4413    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5212    1.6694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7071    1.5358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0440    1.0312    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8581    1.1649    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7527    0.2594    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2755   -0.3788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5668    0.3930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5190    1.2166    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3809    0.5267    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9037   -0.1115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6124   -0.8834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7983   -1.0170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5070   -1.7889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6929   -1.9226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1701   -1.2843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3460   -1.2458    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1279   -0.4501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3561   -0.1588    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8173    0.0031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8558    0.8272    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4614   -0.5125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0298   -2.4271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6722    1.2985    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4863    1.4322    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1494    1.9367    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  4  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  4  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  4  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
  8 23  1  0  0  0  0
 17 23  1  0  0  0  0
 15 24  1  0  0  0  0
 11 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
M  END


  Mrv1533004171515552D          

 27 28  0  0  0  0            999 V2000
    3.2897    3.0795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8125    2.4413    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5212    1.6694    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7071    1.5358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0440    1.0312    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8581    1.1649    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7527    0.2594    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2755   -0.3788    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5668    0.3930    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5190    1.2166    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.3809    0.5267    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9037   -0.1115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6124   -0.8834    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7983   -1.0170    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5070   -1.7889    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6929   -1.9226    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1701   -1.2843    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3460   -1.2458    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1279   -0.4501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3561   -0.1588    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8173    0.0031    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8558    0.8272    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4614   -0.5125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0298   -2.4271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6722    1.2985    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4863    1.4322    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1494    1.9367    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  4  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  4  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  4  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 19 21  1  0  0  0  0
 21 22  2  0  0  0  0
 21 23  1  0  0  0  0
  8 23  1  0  0  0  0
 17 23  1  0  0  0  0
 15 24  1  0  0  0  0
 11 25  1  0  0  0  0
 25 26  2  0  0  0  0
 25 27  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0256596

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC=C(C)C(=O)OC1C2C(OC(=O)C2=C)C=C(C)CCC=C(C1O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C20H24O7/c1-5-11(3)19(24)27-17-15-12(4)20(25)26-14(15)9-10(2)7-6-8-13(16(17)21)18(22)23/h5,8-9,14-17,21H,4,6-7H2,1-3H3,(H,22,23)

> <INCHI_KEY>
HEXYOSGOEISRRL-UHFFFAOYSA-N

> <FORMULA>
C20H24O7

> <MOLECULAR_WEIGHT>
376.405

> <EXACT_MASS>
376.152203113

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
51

> <JCHEM_AVERAGE_POLARIZABILITY>
38.09538059239856

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylic acid

> <ALOGPS_LOGP>
2.28

> <JCHEM_LOGP>
2.9566385333333334

> <ALOGPS_LOGS>
-3.09

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
13.625112679660695

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.293347992682231

> <JCHEM_PKA_STRONGEST_BASIC>
-3.5522005133973646

> <JCHEM_POLAR_SURFACE_AREA>
110.13000000000001

> <JCHEM_REFRACTIVITY>
98.27159999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.04e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0       6.141   5.748   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.117   4.557   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.573   3.116   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.053   2.867   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       7.549   1.925   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       9.068   2.174   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0       7.005   0.484   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       7.981  -0.707   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.525   0.734   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0       8.435   2.271   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      10.044   0.983   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      11.020  -0.208   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.476  -1.649   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.957  -1.898   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.413  -3.339   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.893  -3.589   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       5.917  -2.397   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.379  -2.326   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       3.972  -0.840   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       2.531  -0.296   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       5.259   0.006   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       5.331   1.544   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.461  -0.957   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.389  -4.531   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.588   2.424   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      12.108   2.673   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       9.612   3.615   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9   23                                                  
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12   25                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   24                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18   23                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21    8   17                                                  
CONECT   24   15                                                            
CONECT   25   11   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25                                                            
MASTER        0    0    0    0    0    0    0    0   27    0   56    0
END

View in JSmol

Synonyms

Value	Source
5-Hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-2H,3H,3ah,4H,5H,8H,9H,11ah-cyclodeca[b]furan-6-carboxylate	Generator

Chemical Formula

C₂₀H₂₄O₇

Average Mass

376.4050 Da

Monoisotopic Mass

376.15220 Da

IUPAC Name

5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-2H,3H,3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylic acid

Traditional Name

5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3aH,4H,5H,8H,9H,11aH-cyclodeca[b]furan-6-carboxylic acid

CAS Registry Number

Not Available

SMILES

CC=C(C)C(=O)OC1C2C(OC(=O)C2=C)C=C(C)CCC=C(C1O)C(O)=O

InChI Identifier

InChI=1S/C20H24O7/c1-5-11(3)19(24)27-17-15-12(4)20(25)26-14(15)9-10(2)7-6-8-13(16(17)21)18(22)23/h5,8-9,14-17,21H,4,6-7H2,1-3H3,(H,22,23)

InChI Key

HEXYOSGOEISRRL-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Chaenactis douglasii	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacranolides and derivatives. These are sesquiterpene lactones with a structure based on the germacranolide skeleton, characterized by a gamma lactone fused to a 1,7-dimethylcyclodec-1-ene moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene lactones

Direct Parent

Germacranolides and derivatives

Alternative Parents

Substituents

Germacranolide
Germacrane sesquiterpenoid
Sesquiterpenoid
Tricarboxylic acid or derivatives
Beta-hydroxy acid
Fatty acid ester
Gamma butyrolactone
Fatty acyl
Hydroxy acid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Tetrahydrofuran
Carboxylic acid ester
Secondary alcohol
Lactone
Carboxylic acid derivative
Carboxylic acid
Oxacycle
Organoheterocyclic compound
Organic oxide
Alcohol
Hydrocarbon derivative
Organic oxygen compound
Carbonyl group
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.28	ALOGPS
logP	2.96	ChemAxon
logS	-3.1	ALOGPS
pKa (Strongest Acidic)	4.29	ChemAxon
pKa (Strongest Basic)	-3.6	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	110.13 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	98.27 m³·mol⁻¹	ChemAxon
Polarizability	38.1 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid (NP0256596)

MOL for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

3D MOL for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

3D SDF for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

3D-SDF for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

PDB for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

3D PDB for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

SMILES for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

INCHI for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

Structure for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)

3D Structure for NP0256596 (5-hydroxy-10-methyl-4-[(2-methylbut-2-enoyl)oxy]-3-methylidene-2-oxo-3ah,4h,5h,8h,9h,11ah-cyclodeca[b]furan-6-carboxylic acid)