NP-MRD: Showing NP-Card for methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate (NP0256488)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-07 21:20:08 UTC

Updated at

2022-09-07 21:20:08 UTC

NP-MRD ID

NP0256488

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate

Description

Rumberine belongs to the class of organic compounds known as indolizidines. These are polycyclic compounds containing an indolizidine, which is a bicyclic heterocycle containing a saturated six-member ring fused to a saturated five-member ring, one of the bridging atoms being nitrogen. methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate is found in Hamelia patens. methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate was first documented in 2004 (PMID: 15467206). Based on a literature review very few articles have been published on Rumberine (PMID: 23285803).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072223202D          

 28 32  0  0  1  0            999 V2000
    3.4824   -0.6469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1601    0.1125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6566    0.7714    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4754    0.6708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3342    1.5308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5154    1.6313    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1930    2.3907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6895    3.0496    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3672    3.8090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5084    2.9491    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0049    3.6079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8237    3.5074    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4464    4.0486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1535    3.6237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9679    2.8198    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.7898    2.8917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2147    3.5989    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1122    2.1323    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    1.5911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4751    0.7662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7535    0.3662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0464    0.7912    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3248    0.3912    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0608    1.6160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7824    2.0160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1461    2.7480    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6496    2.0891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8307    2.1896    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  2  0  0  0  0
 19 25  1  0  0  0  0
 15 25  1  0  0  0  0
 15 26  1  0  0  0  0
 26 12  1  6  0  0  0
 26 27  1  0  0  0  0
 28 27  1  6  0  0  0
  5 28  1  0  0  0  0
 10 28  1  0  0  0  0
M  END

     RDKit          3D

 52 56  0  0  0  0  0  0  0  0999 V2000
   -5.1343    1.0238    2.7293 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0518    0.7399    1.8443 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7633   -0.5612    1.4552 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5171   -1.4610    1.9341 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6752   -0.8971    0.5593 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4689   -2.1554    0.2399 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4127   -2.4261   -0.6227 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1062   -1.5654   -1.6799 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.6946   -2.1387   -2.9647 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5652   -0.1485   -1.4648 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6451    0.8488   -2.1017 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6127    0.8916   -1.3994 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4554    1.9828   -1.7880 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2878    2.3625   -0.5740 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7515    1.4052    0.5013 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8949    1.9314    1.8408 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3291    3.0535    2.4559 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6987    1.1676    2.4984 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1643    0.0944    1.7160 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0351   -0.9618    2.0067 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3313   -1.8997    1.0383 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7695   -1.7947   -0.2127 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0495   -2.7211   -1.2017 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9186   -0.7428   -0.4602 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5903    0.2185    0.4690 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3587    1.2140    0.0149 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4183    0.1393    0.6694 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8019    0.1324    0.0028 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.0119    0.4716    3.6908 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0897    2.1311    2.9236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1075    0.7368    2.2892 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1088   -2.9118    0.6474 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0014   -1.5428   -1.8163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9619   -2.1128   -3.7989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9494   -3.2122   -2.8154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6122   -1.5683   -3.1906 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5568   -0.0474   -1.9764 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1342    1.8367   -2.1779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4336    0.4952   -3.1315 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1148    1.7626   -2.6424 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7855    2.8632   -1.9982 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0681    3.3752   -0.2089 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3610    2.1984   -0.7445 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8097    2.9559    3.3325 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5024   -1.0897    2.9724 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0190   -2.7297    1.2753 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6699   -3.5059   -1.0543 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4756   -0.6570   -1.4409 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1628    2.1694    0.0212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4967    0.3410    1.7450 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0270   -0.8548    0.5255 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2017    1.1632    0.0679 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  8 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 15 26  1  0
 26 27  1  0
 27 28  1  0
 15 16  1  1
 16 17  1  0
 16 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  2  0
 28  5  1  0
 25 19  1  0
 28 10  1  0
 26 12  1  0
 25 15  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  6 32  1  0
  8 33  1  6
  9 34  1  0
  9 35  1  0
  9 36  1  0
 10 37  1  6
 11 38  1  0
 11 39  1  0
 13 40  1  0
 13 41  1  0
 14 42  1  0
 14 43  1  0
 26 49  1  6
 27 50  1  0
 27 51  1  0
 28 52  1  6
 17 44  1  0
 20 45  1  0
 21 46  1  0
 23 47  1  0
 24 48  1  0
M  END


  Mrv1652309072223202D          

 28 32  0  0  1  0            999 V2000
    3.4824   -0.6469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1601    0.1125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6566    0.7714    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4754    0.6708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3342    1.5308    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5154    1.6313    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1930    2.3907    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6895    3.0496    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.3672    3.8090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5084    2.9491    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0049    3.6079    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8237    3.5074    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.4464    4.0486    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1535    3.6237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9679    2.8198    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.7898    2.8917    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2147    3.5989    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1122    2.1323    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.4895    1.5911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4751    0.7662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7535    0.3662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0464    0.7912    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3248    0.3912    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0608    1.6160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7824    2.0160    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1461    2.7480    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6496    2.0891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8307    2.1896    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 15 14  1  6  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 24 25  2  0  0  0  0
 19 25  1  0  0  0  0
 15 25  1  0  0  0  0
 15 26  1  0  0  0  0
 26 12  1  6  0  0  0
 26 27  1  0  0  0  0
 28 27  1  6  0  0  0
  5 28  1  0  0  0  0
 10 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0256488

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=CO[C@@H](C)[C@@H]2CN3CC[C@]4([C@@H]3C[C@H]12)C(O)=NC1=CC=C(O)C=C41

> <INCHI_IDENTIFIER>
InChI=1S/C21H24N2O5/c1-11-14-9-23-6-5-21(16-7-12(24)3-4-17(16)22-20(21)26)18(23)8-13(14)15(10-28-11)19(25)27-2/h3-4,7,10-11,13-14,18,24H,5-6,8-9H2,1-2H3,(H,22,26)/t11-,13-,14-,18-,21-/m0/s1

> <INCHI_KEY>
WDOSCDMZYXDQLB-NPJJOBTJSA-N

> <FORMULA>
C21H24N2O5

> <MOLECULAR_WEIGHT>
384.432

> <EXACT_MASS>
384.168521881

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
38.445780989812434

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl (1'S,3S,4'aS,5'aS,10'aS)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate

> <JCHEM_LOGP>
-0.602480626483101

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
10.028325306336393

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.4984405932678846

> <JCHEM_PKA_STRONGEST_BASIC>
10.965197727687416

> <JCHEM_POLAR_SURFACE_AREA>
91.59

> <JCHEM_REFRACTIVITY>
104.12840000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1'S,3S,4'aS,5'aS,10'aS)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       6.500  -1.208   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.899   0.210   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.826   1.440   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       8.354   1.252   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.224   2.857   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.695   3.045   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0       4.094   4.463   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0       5.020   5.693   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.419   7.110   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.549   5.505   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.476   6.735   0.000  0.00  0.00           C+0
HETATM   12  N   UNK     0       9.004   6.547   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0      10.167   7.557   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      11.487   6.764   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      11.140   5.264   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      12.674   5.398   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      13.467   6.718   0.000  0.00  0.00           O+0
HETATM   18  N   UNK     0      13.276   3.980   0.000  0.00  0.00           N+0
HETATM   19  C   UNK     0      12.114   2.970   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      12.087   1.430   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      10.740   0.684   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       9.420   1.477   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       8.073   0.730   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       9.447   3.017   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.794   3.763   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.606   5.130   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       8.679   3.900   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.151   4.087   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   28                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   28                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13   26                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   25   26                                             
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   25                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   19   15                                                  
CONECT   26   15   12   27                                                  
CONECT   27   26   28                                                       
CONECT   28   27    5   10                                                  
MASTER        0    0    0    0    0    0    0    0   28    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₄N₂O₅

Average Mass

384.4320 Da

Monoisotopic Mass

384.16852 Da

IUPAC Name

methyl (1'S,3S,4'aS,5'aS,10'aS)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate

Traditional Name

methyl (1'S,3S,4'aS,5'aS,10'aS)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate

CAS Registry Number

Not Available

SMILES

COC(=O)C1=CO[C@@H](C)[C@@H]2CN3CC[C@]4([C@@H]3C[C@H]12)C(O)=NC1=CC=C(O)C=C41

InChI Identifier

InChI=1S/C21H24N2O5/c1-11-14-9-23-6-5-21(16-7-12(24)3-4-17(16)22-20(21)26)18(23)8-13(14)15(10-28-11)19(25)27-2/h3-4,7,10-11,13-14,18,24H,5-6,8-9H2,1-2H3,(H,22,26)/t11-,13-,14-,18-,21-/m0/s1

InChI Key

WDOSCDMZYXDQLB-NPJJOBTJSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Hamelia patens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as indolizidines. These are polycyclic compounds containing an indolizidine, which is a bicyclic heterocycle containing a saturated six-member ring fused to a saturated five-member ring, one of the bridging atoms being nitrogen.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indolizidines

Sub Class

Not Available

Direct Parent

Indolizidines

Alternative Parents

Substituents

Indole or derivatives
Dihydroindole
Indolizidine
1-hydroxy-2-unsubstituted benzenoid
Phenol
Aralkylamine
Piperidine
N-alkylpyrrolidine
Benzenoid
Pyrrolidine
Methyl ester
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Vinylogous ester
Tertiary aliphatic amine
Tertiary amine
Secondary carboxylic acid amide
Carboxamide group
Amino acid or derivatives
Carboxylic acid ester
Lactam
Azacycle
Oxacycle
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Organic oxygen compound
Organic nitrogen compound
Hydrocarbon derivative
Carbonyl group
Organic oxide
Organooxygen compound
Amine
Organonitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.6	ChemAxon
pKa (Strongest Acidic)	3.5	ChemAxon
pKa (Strongest Basic)	10.97	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	91.59 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	104.13 m³·mol⁻¹	ChemAxon
Polarizability	38.45 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102094751

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Paniagua-Vega D, Cerda-Garcia-Rojas CM, Ponce-Noyola T, Ramos-Valdivia AC: A new monoterpenoid oxindole alkaloid from Hamelia patens micropropagated plantlets. Nat Prod Commun. 2012 Nov;7(11):1441-4. [PubMed:23285803 ]
Reyes-Chilpa R, Rivera J, Oropeza M, Mendoza P, Amekraz B, Jankowski C, Campos M: Methanol extracts of Hamelia patens containing oxindole alkaloids relax KCl-induced contraction in rat myometrium. Biol Pharm Bull. 2004 Oct;27(10):1617-20. doi: 10.1248/bpb.27.1617. [PubMed:15467206 ]
LOTUS database [Link]

Showing NP-Card for methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate (NP0256488)

MOL for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

3D MOL for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

3D SDF for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

3D-SDF for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

PDB for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

3D PDB for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

SMILES for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

INCHI for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

Structure for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)

3D Structure for NP0256488 (methyl (1's,3s,4'as,5'as,10'as)-2,5-dihydroxy-1'-methyl-1',4'a,5',5'a,7',8',10',10'a-octahydrospiro[indole-3,6'-pyrano[3,4-f]indolizine]-4'-carboxylate)