NP-MRD: Showing NP-Card for methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate (NP0256224)

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Record Information

Version

1.0

Created at

2022-09-07 20:58:20 UTC

Updated at

2022-09-07 20:58:20 UTC

NP-MRD ID

NP0256224

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate

Description

Cyperenoic acid methyl ester belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units. methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate is found in Joannesia princeps. It was first documented in 2002 (PMID: 35412727). Based on a literature review a significant number of articles have been published on Cyperenoic acid methyl ester (PMID: 36099392) (PMID: 31661213) (PMID: 31593386) (PMID: 17132214).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 42 44  0  0  0  0  0  0  0  0999 V2000
    4.7489   -0.9185   -1.1788 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4294   -0.6691   -0.7797 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8213   -1.2279    0.3306 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4927   -2.0168    1.0378 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4287   -0.8741    0.6272 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6586   -0.0619   -0.0565 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5955    0.8261   -1.2360 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7326    1.5817   -1.1196 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7121    0.8205   -1.9524 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6283   -0.6267   -1.5866 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7391   -0.7888   -0.0859 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.7078   -2.2785    0.1544 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6923    0.0037    0.5893 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4888   -0.4243    2.0024 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6917   -1.3858    1.8301 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9873    1.4630    0.3721 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3671    1.7902    0.7837 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0229    2.3810    1.0514 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0925   -0.0363   -1.7691 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8560   -1.8520   -1.7675 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4082   -0.9641   -0.2786 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4461    1.5680   -1.2308 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7059    0.2630   -2.1555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6206    2.6423   -1.4289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7449    1.1527   -1.8884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3952    0.9476   -3.0149 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4350   -1.2328   -2.0730 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6910   -1.1363   -1.8824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7367   -0.3552    0.1800 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8336   -2.7107   -0.3431 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5907   -2.6673   -0.4455 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9121   -2.5887    1.1708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3646   -0.9386    2.4539 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1850    0.3573    2.6943 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4014   -2.4158    1.6614 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3425   -1.3218    2.7324 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6981    1.1134    1.6210 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1396    1.7396    0.0230 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4073    2.8245    1.2329 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5573    3.0201    0.3374 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7223    1.8786    1.6825 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5668    3.1188    1.7047 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 11 13  1  0
 13 14  1  1
 14 15  1  0
 13 16  1  0
 16 17  1  0
 16 18  1  0
 15  5  1  0
 13  6  1  0
 16  8  1  0
  1 19  1  0
  1 20  1  0
  1 21  1  0
  7 22  1  0
  7 23  1  0
  8 24  1  6
  9 25  1  0
  9 26  1  0
 10 27  1  0
 10 28  1  0
 11 29  1  1
 12 30  1  0
 12 31  1  0
 12 32  1  0
 14 33  1  0
 14 34  1  0
 15 35  1  0
 15 36  1  0
 17 37  1  0
 17 38  1  0
 17 39  1  0
 18 40  1  0
 18 41  1  0
 18 42  1  0
M  END


  Mrv1652309072222582D          

 18 20  0  0  1  0            999 V2000
   -0.6555    1.5913    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1076    0.9746    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7005    1.1408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9606    1.9237    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2485    0.5241    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0731    0.6050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6811    1.2369    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4511    0.8535    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.1193    0.3042    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9754   -0.5354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1393   -0.7805    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9672   -1.5873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4528   -0.1959    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7856   -0.7146    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0706   -0.2870    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9843    0.2720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7516   -0.0309    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3218   -0.4808    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  8  7  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 11 13  1  0  0  0  0
 13  6  1  1  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
  5 15  1  0  0  0  0
 13 16  1  0  0  0  0
  8 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0256224

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C1=C2C[C@H]3CC[C@@H](C)[C@]2(CC1)C3(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C16H24O2/c1-10-5-6-11-9-13-12(14(17)18-4)7-8-16(10,13)15(11,2)3/h10-11H,5-9H2,1-4H3/t10-,11-,16+/m1/s1

> <INCHI_KEY>
DGOUGOOBFKBPQX-UVWXRNBGSA-N

> <FORMULA>
C16H24O2

> <MOLECULAR_WEIGHT>
248.366

> <EXACT_MASS>
248.177630013

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
42

> <JCHEM_AVERAGE_POLARIZABILITY>
28.905889272455344

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (1R,7R,10R)-10,11,11-trimethyltricyclo[5.3.1.0^{1,5}]undec-4-ene-4-carboxylate

> <JCHEM_LOGP>
3.6284203500000003

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-6.858865125342969

> <JCHEM_POLAR_SURFACE_AREA>
26.3

> <JCHEM_REFRACTIVITY>
71.9141

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (1R,7R,10R)-10,11,11-trimethyltricyclo[5.3.1.0^{1,5}]undec-4-ene-4-carboxylate

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -1.224   2.971   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -0.201   1.819   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.308   2.129   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       1.793   3.591   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       2.330   0.978   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.870   1.129   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.005   2.309   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.442   1.593   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.689   0.568   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       7.421  -0.999   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.860  -1.457   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       5.539  -2.963   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.579  -0.366   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.333  -1.334   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.998  -0.536   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.571   0.508   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.003  -0.058   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.201  -0.897   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   15                                                  
CONECT    6    5    7   13                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   16                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11    6   14   16                                             
CONECT   14   13   15                                                       
CONECT   15   14    5                                                       
CONECT   16   13    8   17   18                                             
CONECT   17   16                                                            
CONECT   18   16                                                            
MASTER        0    0    0    0    0    0    0    0   18    0   40    0
END

View in JSmol

Synonyms

Value	Source
Cyperenoate methyl ester	Generator

Chemical Formula

C₁₆H₂₄O₂

Average Mass

248.3660 Da

Monoisotopic Mass

248.17763 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

COC(=O)C1=C2C[C@H]3CC[C@@H](C)[C@]2(CC1)C3(C)C

InChI Identifier

InChI=1S/C16H24O2/c1-10-5-6-11-9-13-12(14(17)18-4)7-8-16(10,13)15(11,2)3/h10-11H,5-9H2,1-4H3/t10-,11-,16+/m1/s1

InChI Key

DGOUGOOBFKBPQX-UVWXRNBGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Joannesia princeps	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as sesquiterpenoids. These are terpenes with three consecutive isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Sesquiterpenoids

Alternative Parents

Substituents

Patchoulane sesquiterpenoid
Sesquiterpenoid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Methyl ester
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101701117

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Freebody J: "The Root of All Evil is Inactivity": The Response of French Psychiatrists to New Approaches to Patient Work and Occupation, 1918-1939. 2021. [PubMed:36099392 ]
Authors unspecified: Childhood Pulmonary Inflammatory Myofibroblastic Tumors Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:35412727 ]
Authors unspecified: Childhood Adrenocortical Carcinoma Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:31661213 ]
Authors unspecified: Childhood Breast Tumors Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:31593386 ]
Pertino M, Rodriguez JA, Theoduloz C, Razmilic I, Schmeda-Hirschmann G: Gastroprotective activity and cytotoxic effect of cyperenoic acid derivatives. J Pharm Pharmacol. 2006 Nov;58(11):1507-13. doi: 10.1211/jpp.58.11.0012. [PubMed:17132214 ]
LOTUS database [Link]

Showing NP-Card for methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate (NP0256224)

MOL for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

3D MOL for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

3D SDF for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

3D-SDF for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

PDB for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

3D PDB for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

SMILES for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

INCHI for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

Structure for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)

3D Structure for NP0256224 (methyl (1r,7r,10r)-10,11,11-trimethyltricyclo[5.3.1.0¹,⁵]undec-4-ene-4-carboxylate)