NP-MRD: Showing NP-Card for (6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one (NP0255988)

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Record Information

Version

2.0

Created at

2022-09-07 20:40:53 UTC

Updated at

2022-09-07 20:40:53 UTC

NP-MRD ID

NP0255988

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one

Description

(6R)-6-[(1E,3S,5E,7E,9R,11S,12R,13R)-12-{[(2R,3R,4R,5R,6R)-5-{[(2S,4R,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydro-2H-pyran-2-one belongs to the class of organic compounds known as diterpene glycosides. These are diterpenoids in which an isoprene unit is glycosylated. (6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one is found in Lycogala epidendrum. Based on a literature review very few articles have been published on (6R)-6-[(1E,3S,5E,7E,9R,11S,12R,13R)-12-{[(2R,3R,4R,5R,6R)-5-{[(2S,4R,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydro-2H-pyran-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072222402D          

 49 51  0  0  1  0            999 V2000
   -2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
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  8 25  1  0  0  0  0
 25 26  1  6  0  0  0
  6 27  1  0  0  0  0
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 29 30  2  0  0  0  0
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 46 47  1  0  0  0  0
 47 48  2  0  0  0  0
 47 49  1  0  0  0  0
 43 49  1  0  0  0  0
M  END

     RDKit          3D

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    9.5097    3.3704   -2.6695 H   0  0  0  0  0  0  0  0  0  0  0  0
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   12.7880   -0.1693    1.8256 H   0  0  0  0  0  0  0  0  0  0  0  0
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   11.1126   -2.3272    1.9297 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6781   -3.3076   -0.2044 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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 41103  1  0
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 44107  1  0
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 46109  1  0
M  END


  Mrv1652309072222402D          

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   -3.5724   -8.6625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -2.1434  -12.7875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -3.5724  -13.6125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868  -12.3750    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.0013  -12.7875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868  -11.5500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434  -10.3125    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.1434  -11.1375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -9.9000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.7145  -10.3125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -7.4250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7145   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -6.1875    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  6  0  0  0
  4  6  1  0  0  0  0
  6  7  1  6  0  0  0
  8  7  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 14 13  1  1  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  1  0  0  0
 16 18  1  0  0  0  0
 18 19  1  6  0  0  0
 18 20  1  0  0  0  0
 20 21  1  1  0  0  0
 20 22  1  0  0  0  0
 14 22  1  0  0  0  0
 12 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
  8 25  1  0  0  0  0
 25 26  1  6  0  0  0
  6 27  1  0  0  0  0
 27 28  1  1  0  0  0
 27 29  1  0  0  0  0
 29 30  2  0  0  0  0
 29 31  1  0  0  0  0
 31 32  1  1  0  0  0
 31 33  1  0  0  0  0
 33 34  2  0  0  0  0
 34 35  1  0  0  0  0
 34 36  1  0  0  0  0
 36 37  2  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  6  0  0  0
 39 41  1  0  0  0  0
 41 42  2  0  0  0  0
 43 42  1  1  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 45 46  2  0  0  0  0
 46 47  1  0  0  0  0
 47 48  2  0  0  0  0
 47 49  1  0  0  0  0
 43 49  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0255988

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC[C@@H](C)[C@@H](O[C@@H]1O[C@H](C)[C@H](O[C@H]2C[C@@H](O)[C@H](O)[C@@H](C)O2)[C@H](O)[C@H]1O)[C@H](C)C(=O)[C@H](C)\C=C(/C)\C=C\C[C@H](C)\C=C\[C@H]1CC=CC(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C38H60O11/c1-9-12-23(4)36(49-38-35(44)34(43)37(27(8)46-38)48-31-20-29(39)33(42)26(7)45-31)25(6)32(41)24(5)19-22(3)14-10-13-21(2)17-18-28-15-11-16-30(40)47-28/h10-11,14,16-19,21,23-29,31,33-39,42-44H,9,12-13,15,20H2,1-8H3/b14-10+,18-17+,22-19+/t21-,23+,24+,25+,26+,27+,28+,29+,31-,33+,34+,35+,36+,37-,38-/m0/s1

> <INCHI_KEY>
NNIKSBGUOULFOA-IUKQMUBCSA-N

> <FORMULA>
C38H60O11

> <MOLECULAR_WEIGHT>
692.887

> <EXACT_MASS>
692.413562752

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
109

> <JCHEM_AVERAGE_POLARIZABILITY>
77.33936088232286

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(6R)-6-[(1E,3S,5E,7E,9R,11S,12R,13R)-12-{[(2R,3R,4R,5R,6R)-5-{[(2S,4R,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydro-2H-pyran-2-one

> <JCHEM_LOGP>
6.082561677

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.13274727362602

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.22241284616834

> <JCHEM_PKA_STRONGEST_BASIC>
-3.252560654996615

> <JCHEM_POLAR_SURFACE_AREA>
161.20999999999998

> <JCHEM_REFRACTIVITY>
187.39160000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(6R)-6-[(1E,3S,5E,7E,9R,11S,12R,13R)-12-{[(2R,3R,4R,5R,6R)-5-{[(2S,4R,5S,6R)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.001 -10.010   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -4.001 -11.550   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.667 -12.320   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -2.667 -13.860   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -4.001 -14.630   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.334 -14.630   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.334 -16.170   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -2.667 -16.940   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -4.001 -16.170   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -5.335 -16.940   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -6.668 -16.170   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -5.335 -18.480   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0      -6.668 -19.250   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0      -6.668 -20.790   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -5.335 -21.560   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -5.335 -23.100   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      -4.001 -23.870   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      -6.668 -23.870   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -6.668 -25.410   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      -8.002 -23.100   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -9.336 -23.870   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -8.002 -21.560   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -4.001 -19.250   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -4.001 -20.790   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      -2.667 -18.480   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      -1.334 -19.250   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       0.000 -13.860   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.334 -14.630   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       0.000 -12.320   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      -1.334 -11.550   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0       1.334 -11.550   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       2.667 -12.320   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       1.334 -10.010   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       4.001 -10.010   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM   49  O   UNK     0       2.667   0.000   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7   27                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   25                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   23                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   22                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   14                                                       
CONECT   23   12   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23    8   26                                                  
CONECT   26   25                                                            
CONECT   27    6   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30   31                                                  
CONECT   30   29                                                            
CONECT   31   29   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   34                                                       
CONECT   34   33   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   41                                                  
CONECT   40   39                                                            
CONECT   41   39   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44   49                                                  
CONECT   44   43   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48   49                                                  
CONECT   48   47                                                            
CONECT   49   47   43                                                       
MASTER        0    0    0    0    0    0    0    0   49    0  102    0
END

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Synonyms

Not Available

Chemical Formula

C₃₈H₆₀O₁₁

Average Mass

692.8870 Da

Monoisotopic Mass

692.41356 Da

IUPAC Name

Traditional Name

CAS Registry Number

Not Available

SMILES

CCC[C@@H](C)[C@@H](O[C@@H]1O[C@H](C)[C@H](O[C@H]2C[C@@H](O)[C@H](O)[C@@H](C)O2)[C@H](O)[C@H]1O)[C@H](C)C(=O)[C@H](C)\C=C(/C)\C=C\C[C@H](C)\C=C\[C@H]1CC=CC(=O)O1

InChI Identifier

InChI=1S/C38H60O11/c1-9-12-23(4)36(49-38-35(44)34(43)37(27(8)46-38)48-31-20-29(39)33(42)26(7)45-31)25(6)32(41)24(5)19-22(3)14-10-13-21(2)17-18-28-15-11-16-30(40)47-28/h10-11,14,16-19,21,23-29,31,33-39,42-44H,9,12-13,15,20H2,1-8H3/b14-10+,18-17+,22-19+/t21-,23+,24+,25+,26+,27+,28+,29+,31-,33+,34+,35+,36+,37-,38-/m0/s1

InChI Key

NNIKSBGUOULFOA-IUKQMUBCSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Lycogala epidendrum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as diterpene glycosides. These are diterpenoids in which an isoprene unit is glycosylated.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Terpene glycosides

Direct Parent

Diterpene glycosides

Alternative Parents

Substituents

Diterpene glycoside
Diterpene lactone
Diterpenoid
Fatty acyl glycoside
Fatty acyl glycoside of mono- or disaccharide
Alkyl glycoside
Disaccharide
Glycosyl compound
O-glycosyl compound
Dihydropyranone
Fatty acyl
Pyran
Oxane
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Ketone
Secondary alcohol
Lactone
Carboxylic acid ester
Monocarboxylic acid or derivatives
Acetal
Organoheterocyclic compound
Oxacycle
Carboxylic acid derivative
Organooxygen compound
Organic oxide
Hydrocarbon derivative
Carbonyl group
Organic oxygen compound
Aldehyde
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.08	ChemAxon
pKa (Strongest Acidic)	12.22	ChemAxon
pKa (Strongest Basic)	-3.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	161.21 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	187.39 m³·mol⁻¹	ChemAxon
Polarizability	77.34 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

8660202

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

10484796

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one (NP0255988)

MOL for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

3D MOL for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

3D SDF for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

3D-SDF for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

PDB for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

3D PDB for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

SMILES for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

INCHI for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

Structure for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)

3D Structure for NP0255988 ((6r)-6-[(1e,3s,5e,7e,9r,11s,12r,13r)-12-{[(2r,3r,4r,5r,6r)-5-{[(2s,4r,5s,6r)-4,5-dihydroxy-6-methyloxan-2-yl]oxy}-3,4-dihydroxy-6-methyloxan-2-yl]oxy}-3,7,9,11,13-pentamethyl-10-oxohexadeca-1,5,7-trien-1-yl]-5,6-dihydropyran-2-one)