NP-MRD: Showing NP-Card for (9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one (NP0255951)

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Record Information

Version

2.0

Created at

2022-09-07 20:37:39 UTC

Updated at

2022-09-07 20:37:39 UTC

NP-MRD ID

NP0255951

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one

Description

Praeroside IV belongs to the class of organic compounds known as angular pyranocoumarins. These are organic compounds containing a pyran (or a hydrogenated derivative) angularly fused to a coumarin moiety. (9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one is found in Peucedanum praeruptorum. (9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one was first documented in 2006 (PMID: 16226032). Based on a literature review very few articles have been published on praeroside IV.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072222372D          

 29 32  0  0  1  0            999 V2000
    1.4009   -0.2947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4009   -1.3553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -1.5395    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -1.5395    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0329   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -2.2539    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7954   -2.9684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -2.9684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4421   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -4.3974    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4421   -2.2539    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2671   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -1.5395    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4421   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7954   -1.5395    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2079   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  8 14  1  0  0  0  0
 14 15  2  0  0  0  0
  5 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  2 17  1  0  0  0  0
 17 18  1  1  0  0  0
 19 18  1  6  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  1  0  0  0  0
 21 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 26 27  1  6  0  0  0
 26 28  1  0  0  0  0
 19 28  1  0  0  0  0
 28 29  1  1  0  0  0
M  END

     RDKit          3D

 53 56  0  0  0  0  0  0  0  0999 V2000
   -0.1454   -1.8112   -2.2410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8402   -0.5334   -1.7543 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2901    0.6001   -2.6295 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1859   -0.6604   -2.0318 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2105   -0.2913   -1.1757 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4696    0.0557   -1.6197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4236    0.4080   -0.7001 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1634    0.4260    0.6542 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0928    0.7728    1.6006 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7231    0.7560    2.9289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4418    0.3983    3.3165 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1469    0.3972    4.5494 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6008    0.0789    2.3810 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9020    0.0779    1.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9211   -0.2830    0.1659 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5828   -0.6508    0.6461 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4947   -0.2629   -0.3174 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7058   -0.8434   -0.0733 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7534    0.0118    0.2182 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.6755   -0.1361   -0.8406 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7998    0.6377   -0.5615 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6275    0.6778   -1.8391 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7855    1.4349   -1.6635 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5896   -0.1554    0.4614 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.6420    0.6630    0.9352 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7662   -0.7050    1.5657 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9394   -2.0931    1.5886 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.3176   -0.3584    1.5373 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1016    0.6878    2.4493 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7012   -2.1331   -3.1619 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8753   -1.5504   -2.5710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1796   -2.5983   -1.4754 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0898    1.0735   -3.2286 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4839    0.2617   -3.3169 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1488    1.3841   -1.9706 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6544    0.0361   -2.6766 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4191    0.6855   -1.0082 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0817    1.0460    1.2619 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4377    1.0243    3.6804 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5344   -1.7492    0.8085 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4064   -0.0786    1.5810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3741    0.8567   -0.2249 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4722    1.0725    0.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5773    1.6372   -0.1941 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8995   -0.3634   -2.1228 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0747    1.1250   -2.6818 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5276    2.3147   -1.3104 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1057   -0.9607   -0.1181 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4231    0.9361    1.8703 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2250   -0.3450    2.5348 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0407   -2.3685    0.6295 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7709   -1.2371    1.9954 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1848    0.6316    2.8411 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 11 13  1  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  1  0
 21 22  1  0
 22 23  1  0
 21 24  1  0
 24 25  1  0
 24 26  1  0
 26 27  1  0
 26 28  1  0
 28 29  1  0
 17  2  1  0
 28 19  1  0
 15  5  1  0
 14  8  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
  3 33  1  0
  3 34  1  0
  3 35  1  0
  6 36  1  0
  7 37  1  0
  9 38  1  0
 10 39  1  0
 16 40  1  0
 16 41  1  0
 17 42  1  6
 19 43  1  1
 21 44  1  1
 22 45  1  0
 22 46  1  0
 23 47  1  0
 24 48  1  6
 25 49  1  0
 26 50  1  1
 27 51  1  0
 28 52  1  1
 29 53  1  0
M  END


  Mrv1652309072222372D          

 29 32  0  0  1  0            999 V2000
    1.4009   -0.2947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4009   -1.3553    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.6039    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -0.1105    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7454   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1579   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9204   -1.5395    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4454   -1.5395    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.0329   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2079   -2.2539    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.7954   -2.9684    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -2.9684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4421   -3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -4.3974    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4421   -2.2539    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.2671   -2.2539    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0296   -1.5395    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.4421   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7954   -1.5395    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2079   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
  8 14  1  0  0  0  0
 14 15  2  0  0  0  0
  5 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
  2 17  1  0  0  0  0
 17 18  1  1  0  0  0
 19 18  1  6  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  1  6  0  0  0
 22 23  1  0  0  0  0
 21 24  1  0  0  0  0
 24 25  1  1  0  0  0
 24 26  1  0  0  0  0
 26 27  1  6  0  0  0
 26 28  1  0  0  0  0
 19 28  1  0  0  0  0
 28 29  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0255951

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)OC2=CC=C3C=CC(=O)OC3=C2C[C@H]1O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C20H24O9/c1-20(2)13(27-19-17(25)16(24)15(23)12(8-21)26-19)7-10-11(29-20)5-3-9-4-6-14(22)28-18(9)10/h3-6,12-13,15-17,19,21,23-25H,7-8H2,1-2H3/t12-,13-,15-,16+,17-,19+/m1/s1

> <INCHI_KEY>
BPBRRMGZTUDRDI-LDSJTTMQSA-N

> <FORMULA>
C20H24O9

> <MOLECULAR_WEIGHT>
408.403

> <EXACT_MASS>
408.142032353

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
40.300423663122714

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(13R)-12,12-dimethyl-13-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,11-dioxatricyclo[8.4.0.0^{2,7}]tetradeca-1,5,7,9-tetraen-4-one

> <JCHEM_LOGP>
-0.03844203866666626

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.200034080947749

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.210417165372782

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810835560283255

> <JCHEM_POLAR_SURFACE_AREA>
134.91000000000003

> <JCHEM_REFRACTIVITY>
98.75420000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(13R)-12,12-dimethyl-13-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,11-dioxatricyclo[8.4.0.0^{2,7}]tetradeca-1,5,7,9-tetraen-4-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       2.615  -0.550   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.795  -1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.615  -2.530   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       4.565  -0.206   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.105  -0.206   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.875   1.127   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.415   1.127   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.185  -0.206   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      10.725  -0.206   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.495  -1.540   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      10.725  -2.874   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      11.495  -4.207   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       9.185  -2.874   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       8.415  -1.540   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.875  -1.540   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.105  -2.874   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.565  -2.874   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       3.795  -4.207   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       2.255  -4.207   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0       1.485  -5.541   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -0.055  -5.541   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -0.825  -6.875   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      -0.055  -8.208   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      -0.825  -4.207   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      -2.365  -4.207   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0      -0.055  -2.874   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      -0.825  -1.540   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       1.485  -2.874   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       2.255  -1.540   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4   17                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   15                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   14                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13    8   15                                                  
CONECT   15   14    5   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16    2   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   28                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   24                                                  
CONECT   22   21   23                                                       
CONECT   23   22                                                            
CONECT   24   21   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   19   29                                                  
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   64    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₄O₉

Average Mass

408.4030 Da

Monoisotopic Mass

408.14203 Da

IUPAC Name

(13R)-12,12-dimethyl-13-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,11-dioxatricyclo[8.4.0.0^{2,7}]tetradeca-1,5,7,9-tetraen-4-one

Traditional Name

(13R)-12,12-dimethyl-13-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-3,11-dioxatricyclo[8.4.0.0^{2,7}]tetradeca-1,5,7,9-tetraen-4-one

CAS Registry Number

Not Available

SMILES

CC1(C)OC2=CC=C3C=CC(=O)OC3=C2C[C@H]1O[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O

InChI Identifier

InChI=1S/C20H24O9/c1-20(2)13(27-19-17(25)16(24)15(23)12(8-21)26-19)7-10-11(29-20)5-3-9-4-6-14(22)28-18(9)10/h3-6,12-13,15-17,19,21,23-25H,7-8H2,1-2H3/t12-,13-,15-,16+,17-,19+/m1/s1

InChI Key

BPBRRMGZTUDRDI-LDSJTTMQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Peucedanum praeruptorum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as angular pyranocoumarins. These are organic compounds containing a pyran (or a hydrogenated derivative) angularly fused to a coumarin moiety.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Coumarins and derivatives

Sub Class

Pyranocoumarins

Direct Parent

Angular pyranocoumarins

Alternative Parents

Substituents

Angular pyranocoumarin
Pyranochromene
Hexose monosaccharide
2,2-dimethyl-1-benzopyran
Glycosyl compound
O-glycosyl compound
Chromane
1-benzopyran
Benzopyran
Alkyl aryl ether
Pyranone
Benzenoid
Pyran
Oxane
Monosaccharide
Heteroaromatic compound
Secondary alcohol
Lactone
Oxacycle
Organoheterocyclic compound
Ether
Acetal
Polyol
Hydrocarbon derivative
Primary alcohol
Organic oxygen compound
Organic oxide
Organooxygen compound
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.038	ChemAxon
pKa (Strongest Acidic)	12.21	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	134.91 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	98.75 m³·mol⁻¹	ChemAxon
Polarizability	40.3 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00020010

Chemspider ID

25031837

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44144278

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Yoshikawa M, Nishida N, Ninomiya K, Ohgushi T, Kubo M, Morikawa T, Matsuda H: Inhibitory effects of coumarin and acetylene constituents from the roots of Angelica furcijuga on D-galactosamine/lipopolysaccharide-induced liver injury in mice and on nitric oxide production in lipopolysaccharide-activated mouse peritoneal macrophages. Bioorg Med Chem. 2006 Jan 15;14(2):456-63. doi: 10.1016/j.bmc.2005.08.038. Epub 2005 Oct 12. [PubMed:16226032 ]
LOTUS database [Link]

Showing NP-Card for (9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one (NP0255951)

MOL for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

3D MOL for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

3D SDF for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

3D-SDF for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

PDB for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

3D PDB for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

SMILES for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

INCHI for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

Structure for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)

3D Structure for NP0255951 ((9r)-8,8-dimethyl-9-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-9h,10h-pyrano[2,3-h]chromen-2-one)