NP-MRD: Showing NP-Card for 3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine (NP0255874)

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Record Information

Version

1.0

Created at

2022-09-07 20:31:12 UTC

Updated at

2022-09-07 20:31:12 UTC

NP-MRD ID

NP0255874

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine

Description

Anatalline belongs to the class of organic compounds known as alkaloids and derivatives. These are naturally occurring chemical compounds that contain mostly basic nitrogen atoms. This group also includes some related compounds with neutral and even weakly acidic properties. Also some synthetic compounds of similar structure are attributed to alkaloids. In addition to carbon, hydrogen and nitrogen, alkaloids may also contain oxygen, sulfur and more rarely other elements such as chlorine, bromine, and phosphorus. 3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine is found in Nicotiana tabacum. Anatalline is a very strong basic compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 35 37  0  0  0  0  0  0  0  0999 V2000
   -4.0116    1.8568    0.2010 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5697    1.6198    1.4331 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0267    0.6700    2.2281 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9433   -0.0463    1.8234 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3458    0.1530    0.5962 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1863   -0.6526    0.2287 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3814   -1.4566   -1.0332 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1290   -2.1778   -1.3907 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0481   -1.3639   -1.4201 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2020   -0.6815   -0.1681 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4872   -0.0277    0.0259 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0955    0.7370   -0.9492 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3173    1.3273   -0.6915 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9620    1.1825    0.5142 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3561    0.4327    1.4578 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.1688   -0.1501    1.2287 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0152    0.2653   -0.0362 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9058    1.1248   -0.2105 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4678    2.6256   -0.4176 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4372    2.1773    1.7844 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5641   -0.7932    2.5196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9343   -1.3489    1.0290 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7960   -0.8198   -1.8262 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1570   -2.2355   -0.7930 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2731   -2.6114   -2.4167 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0002   -3.0415   -0.7151 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8692   -2.0013   -1.5414 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0600   -1.4570    0.6380 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6017    0.8664   -1.9161 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8024    1.9302   -1.4530 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9169    1.6455    0.7118 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7143   -0.7515    2.0279 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1454    1.0093    0.7475 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1591    0.6836   -1.0498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4737    1.3098   -1.1671 H   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  1  0
  7  6  1  0
  6 17  1  0
 17 10  1  0
 10  9  1  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
  6  5  1  0
  5 18  2  0
 18  1  1  0
  1  2  2  0
  2  3  1  0
  3  4  2  0
  9  8  1  0
 16 11  1  0
  4  5  1  0
  8 25  1  0
  8 26  1  0
  7 23  1  0
  7 24  1  0
  6 22  1  1
 17 33  1  0
 17 34  1  0
 10 28  1  1
  9 27  1  0
 12 29  1  0
 13 30  1  0
 14 31  1  0
 16 32  1  0
 18 35  1  0
  1 19  1  0
  2 20  1  0
  4 21  1  0
M  END


  Mrv1533004161514552D          

 18 20  0  0  0  0            999 V2000
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434   -2.8875    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  1  6  1  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
  7 12  1  0  0  0  0
  3 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0255874

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C1CC(CC(N1)C1=CC=CN=C1)C1=CC=CN=C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H17N3/c1-3-13(10-16-6-1)12-5-8-18-15(9-12)14-4-2-7-17-11-14/h1-4,6-7,10-12,15,18H,5,8-9H2

> <INCHI_KEY>
COWQBMIVVHLMNO-UHFFFAOYSA-N

> <FORMULA>
C15H17N3

> <MOLECULAR_WEIGHT>
239.322

> <EXACT_MASS>
239.142247559

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
35

> <JCHEM_AVERAGE_POLARIZABILITY>
27.096545443926974

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-[4-(pyridin-3-yl)piperidin-2-yl]pyridine

> <ALOGPS_LOGP>
1.61

> <JCHEM_LOGP>
1.4272060623333331

> <ALOGPS_LOGS>
-3.39

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
8.971556963391146

> <JCHEM_POLAR_SURFACE_AREA>
37.81

> <JCHEM_REFRACTIVITY>
71.44800000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.79e-02 g/l

> <JCHEM_TRADITIONAL_IUPAC>
anatalline

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 16-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   16-APR-15         0                                  
HETATM    1  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.334  -5.390   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       2.667  -3.080   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       2.667   1.540   0.000  0.00  0.00           N+0
HETATM   12  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.334  -6.930   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.667  -7.700   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -4.001  -6.930   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0      -4.001  -5.390   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0      -2.667  -4.620   0.000  0.00  0.00           C+0
CONECT    1    2    6                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4   13                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5    1                                                       
CONECT    7    5    8   12                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11    7                                                       
CONECT   13    3   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   13                                                       
MASTER        0    0    0    0    0    0    0    0   18    0   40    0
END

View in JSmol

Synonyms

Value	Source
2,4-Di(3-pyridyl)piperidine	MeSH

Chemical Formula

C₁₅H₁₇N₃

Average Mass

239.3220 Da

Monoisotopic Mass

239.14225 Da

IUPAC Name

3-[4-(pyridin-3-yl)piperidin-2-yl]pyridine

Traditional Name

anatalline

CAS Registry Number

Not Available

SMILES

C1CC(CC(N1)C1=CC=CN=C1)C1=CC=CN=C1

InChI Identifier

InChI=1S/C15H17N3/c1-3-13(10-16-6-1)12-5-8-18-15(9-12)14-4-2-7-17-11-14/h1-4,6-7,10-12,15,18H,5,8-9H2

InChI Key

COWQBMIVVHLMNO-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nicotiana tabacum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as alkaloids and derivatives. These are naturally occurring chemical compounds that contain mostly basic nitrogen atoms. This group also includes some related compounds with neutral and even weakly acidic properties. Also some synthetic compounds of similar structure are attributed to alkaloids. In addition to carbon, hydrogen and nitrogen, alkaloids may also contain oxygen, sulfur and more rarely other elements such as chlorine, bromine, and phosphorus.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Not Available

Sub Class

Not Available

Direct Parent

Alkaloids and derivatives

Alternative Parents

Substituents

Alkaloid or derivatives
Aralkylamine
Pyridine
Piperidine
Heteroaromatic compound
Azacycle
Organoheterocyclic compound
Secondary amine
Secondary aliphatic amine
Organic nitrogen compound
Organopnictogen compound
Hydrocarbon derivative
Organonitrogen compound
Amine
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

citraconoyl group (CHEBI:31211 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.61	ALOGPS
logP	1.43	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Basic)	8.97	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	37.81 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	71.45 m³·mol⁻¹	ChemAxon
Polarizability	27.1 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00025768

Chemspider ID

Not Available

KEGG Compound ID

C12454

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

443848

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine (NP0255874)

MOL for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

3D MOL for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

3D SDF for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

3D-SDF for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

PDB for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

3D PDB for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

SMILES for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

INCHI for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

Structure for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)

3D Structure for NP0255874 (3-[2-(pyridin-3-yl)piperidin-4-yl]pyridine)