NP-MRD: Showing NP-Card for (1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol (NP0255648)

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Record Information

Version

2.0

Created at

2022-09-07 20:12:44 UTC

Updated at

2022-09-07 20:12:44 UTC

NP-MRD ID

NP0255648

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol

Description

(1R,2E,6E)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups. (1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol is found in Asarum caulescens. Based on a literature review very few articles have been published on (1R,2E,6E)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309072222122D          

 16 16  0  0  1  0            999 V2000
    1.0326    3.2727    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6271    2.7006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4197    2.9295    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    1.8998    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0234    1.3278    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8253    0.5269    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4197   -0.0451    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2124    0.1837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2216   -0.8460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.0748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8345   -0.5028    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0326    0.2981    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5394    0.9491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4381    0.8701    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3545    0.6413    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6363    1.6710    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 12 14  1  0  0  0  0
 14 15  1  6  0  0  0
 14 16  1  0  0  0  0
  4 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0255648

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=C1C\C=C(C)\CC\C=C(C)\[C@H](O)C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O/c1-11(2)14-9-8-12(3)6-5-7-13(4)15(16)10-14/h7-8,15-16H,5-6,9-10H2,1-4H3/b12-8+,13-7+/t15-/m1/s1

> <INCHI_KEY>
URBDUDPFJJLTRI-HNFPJAEESA-N

> <FORMULA>
C15H24O

> <MOLECULAR_WEIGHT>
220.356

> <EXACT_MASS>
220.182715393

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
26.40129889716836

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2E,6E)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol

> <JCHEM_LOGP>
3.547124364666667

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
18.56841119470888

> <JCHEM_PKA_STRONGEST_BASIC>
-1.2379769434343366

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
72.60429999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2E,6E)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       1.928   6.109   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       3.037   5.041   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.517   5.468   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667   3.546   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.777   2.478   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       3.407   0.984   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.517  -0.084   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.996   0.343   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.147  -1.579   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667  -2.006   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.558  -0.938   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.928   0.556   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.874   1.772   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.818   1.624   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      -0.662   1.197   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       1.188   3.119   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5   16                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14                                                  
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14    4                                                       
MASTER        0    0    0    0    0    0    0    0   16    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O

Average Mass

220.3560 Da

Monoisotopic Mass

220.18272 Da

IUPAC Name

(1R,2E,6E)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol

Traditional Name

(1R,2E,6E)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol

CAS Registry Number

Not Available

SMILES

CC(C)=C1C\C=C(C)\CC\C=C(C)\[C@H](O)C1

InChI Identifier

InChI=1S/C15H24O/c1-11(2)14-9-8-12(3)6-5-7-13(4)15(16)10-14/h7-8,15-16H,5-6,9-10H2,1-4H3/b12-8+,13-7+/t15-/m1/s1

InChI Key

URBDUDPFJJLTRI-HNFPJAEESA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Asarum caulescens	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as germacrane sesquiterpenoids. These are sesquiterpenoids having the germacrane skeleton, with a structure characterized by a cyclodecane ring substituted with an isopropyl and two methyl groups.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

Germacrane sesquiterpenoids

Alternative Parents

Substituents

Germacrane sesquiterpenoid
Secondary alcohol
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aliphatic homomonocyclic compound

Molecular Framework

Aliphatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.55	ChemAxon
pKa (Strongest Acidic)	18.57	ChemAxon
pKa (Strongest Basic)	-1.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	20.23 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	72.6 m³·mol⁻¹	ChemAxon
Polarizability	26.4 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

20120031

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

21159055

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol (NP0255648)

MOL for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

3D MOL for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

3D SDF for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

3D-SDF for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

PDB for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

3D PDB for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

SMILES for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

INCHI for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

Structure for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)

3D Structure for NP0255648 ((1r,2e,6e)-2,6-dimethyl-9-(propan-2-ylidene)cyclodeca-2,6-dien-1-ol)