NP-MRD: Showing NP-Card for 3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene (NP0255579)

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Record Information

Version

1.0

Created at

2022-09-07 20:07:38 UTC

Updated at

2022-09-07 20:07:38 UTC

NP-MRD ID

NP0255579

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene

Description

3,7,11,15,15-Pentamethylbicyclo[12.1.0]Pentadeca-2,6,10-triene belongs to the class of organic compounds known as cembrane diterpenoids. These are diterpenoids with a structure based a cembrane skeleton, which is characterized by the presence of an isopropyl group at C-1 and by three symmetrically disposed methyl groups a the t C-4, -8 and -12 positions. 3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene is found in Ricinus communis. 3,7,11,15,15-Pentamethylbicyclo[12.1.0]Pentadeca-2,6,10-triene is possibly neutral.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 52 53  0  0  0  0  0  0  0  0999 V2000
   -4.2076   -1.5300   -0.7211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8495   -1.2828   -0.0798 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2421   -2.2504    0.5822 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9510   -2.1915    1.2549 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2030   -2.8409    0.5790 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5492   -2.3426   -0.7611 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0943   -3.1968   -1.9251 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2051   -1.2436   -1.0325 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7214   -0.2912   -0.0114 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.8121    1.0680   -0.5042 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3241    2.2064    0.2849 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1953    2.0519    1.2052 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9699    2.8513    0.7004 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6813    4.2831    0.3419 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1901    2.4031    0.5533 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6039    0.9985    0.8747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2912    0.0726   -0.2689 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0585    0.3308   -0.2077 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8877    0.6540    1.0122 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8806   -0.1860   -1.3706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2368   -2.5796   -1.0384 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9828   -1.2799    0.0275 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3410   -0.9004   -1.6044 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7969   -3.2075    0.6150 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7216   -1.1773    1.6469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0884   -2.7884    2.2255 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0700   -2.7669    1.2885 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0182   -3.9472    0.5688 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0945   -2.5829   -2.8142 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9624   -3.8473   -2.1590 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7537   -3.8383   -1.6482 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4084   -0.9710   -2.0811 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5108   -0.5958    1.0250 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5915    1.1732   -1.6117 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2243    2.5898    0.8719 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1254    3.0781   -0.4101 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4495    2.5668    2.1867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1869    1.0521    1.3660 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8257    4.4009   -0.7525 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4506    4.9298    0.8561 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3090    4.6010    0.6735 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9516    3.1075    0.1693 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7252    0.9948    0.9803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2206    0.6522    1.8413 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2325    0.0203   -0.5127 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7646    0.5507   -1.1867 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6390   -0.1836    1.1272 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5037    1.5683    0.8710 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3083    0.6526    1.9496 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3035   -0.2268   -2.3117 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3327   -1.1656   -1.1075 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7081    0.5565   -1.5584 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  2  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 13 15  2  0
 15 16  1  0
 16 17  1  0
 10 18  1  0
 18 19  1  0
 18 20  1  0
 17  2  1  0
 18  9  1  0
  1 21  1  0
  1 22  1  0
  1 23  1  0
  3 24  1  0
  4 25  1  0
  4 26  1  0
  5 27  1  0
  5 28  1  0
  7 29  1  0
  7 30  1  0
  7 31  1  0
  8 32  1  0
  9 33  1  1
 10 34  1  6
 11 35  1  0
 11 36  1  0
 12 37  1  0
 12 38  1  0
 14 39  1  0
 14 40  1  0
 14 41  1  0
 15 42  1  0
 16 43  1  0
 16 44  1  0
 17 45  1  0
 17 46  1  0
 19 47  1  0
 19 48  1  0
 19 49  1  0
 20 50  1  0
 20 51  1  0
 20 52  1  0
M  END


  Mrv1533004171515552D          

 20 21  0  0  0  0            999 V2000
    6.4302    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4676    1.7107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4676    0.7643    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  4  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  4  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  4  0  0  0
 14 15  1  0  0  0  0
  2 15  1  0  0  0  0
 12 16  1  0  0  0  0
  9 17  1  0  0  0  0
  8 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
  6 20  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0255579

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1=CCCC(C)=CC2C(CCC(C)=CCC1)C2(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C20H32/c1-15-8-6-10-16(2)12-13-18-19(20(18,4)5)14-17(3)11-7-9-15/h9-10,14,18-19H,6-8,11-13H2,1-5H3

> <INCHI_KEY>
ZJMVJDFTNPZVMB-UHFFFAOYSA-N

> <FORMULA>
C20H32

> <MOLECULAR_WEIGHT>
272.476

> <EXACT_MASS>
272.25040103

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
34.95942931757151

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene

> <ALOGPS_LOGP>
6.34

> <JCHEM_LOGP>
6.121089996333334

> <ALOGPS_LOGS>
-5.05

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
92.3275

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.41e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  C   UNK     0      12.003   0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.669   1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.336   0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.002  -1.540   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.668   0.770   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.335   3.080   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.668   5.390   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.002   6.160   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.336   5.390   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.336   3.850   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      10.669   3.080   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.002   7.700   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.740   3.193   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.740   1.427   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.335  -1.540   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   15                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   20                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   17                                                  
CONECT    9    8   10   17                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   16                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14    2                                                       
CONECT   16   12                                                            
CONECT   17    9    8   18   19                                             
CONECT   18   17                                                            
CONECT   19   17                                                            
CONECT   20    6                                                            
MASTER        0    0    0    0    0    0    0    0   20    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₃₂

Average Mass

272.4760 Da

Monoisotopic Mass

272.25040 Da

IUPAC Name

3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene

Traditional Name

3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene

CAS Registry Number

Not Available

SMILES

CC1=CCCC(C)=CC2C(CCC(C)=CCC1)C2(C)C

InChI Identifier

InChI=1S/C20H32/c1-15-8-6-10-16(2)12-13-18-19(20(18,4)5)14-17(3)11-7-9-15/h9-10,14,18-19H,6-8,11-13H2,1-5H3

InChI Key

ZJMVJDFTNPZVMB-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Ricinus communis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cembrane diterpenoids. These are diterpenoids with a structure based a cembrane skeleton, which is characterized by the presence of an isopropyl group at C-1 and by three symmetrically disposed methyl groups a the t C-4, -8 and -12 positions.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Diterpenoids

Direct Parent

Cembrane diterpenoids

Alternative Parents

Substituents

Cembrane diterpenoid
Branched unsaturated hydrocarbon
Polycyclic hydrocarbon
Cyclic olefin
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Hydrocarbon
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

a small molecule (CPD-684 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	6.34	ALOGPS
logP	6.12	ChemAxon
logS	-5	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	92.33 m³·mol⁻¹	ChemAxon
Polarizability	34.96 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

439496

PDB ID

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ChEBI ID

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Good Scents ID

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References

General References

LOTUS database [Link]

Showing NP-Card for 3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene (NP0255579)

MOL for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

3D MOL for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

3D SDF for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

3D-SDF for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

PDB for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

3D PDB for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

SMILES for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

INCHI for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

Structure for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)

3D Structure for NP0255579 (3,7,11,15,15-pentamethylbicyclo[12.1.0]pentadeca-2,6,10-triene)