NP-MRD: Showing NP-Card for 6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid (NP0255358)

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Record Information

Version

2.0

Created at

2022-09-07 19:49:45 UTC

Updated at

2022-09-07 19:49:45 UTC

NP-MRD ID

NP0255358

Secondary Accession Numbers

None

Natural Product Identification

Common Name

6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid

Description

6-Chloro-N-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-N-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid belongs to the class of organic compounds known as gamma amino acids and derivatives. These are amino acids having a (-NH2) group attached to the gamma carbon atom. Based on a literature review very few articles have been published on 6-chloro-N-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-N-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072221492D          

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M  END

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M  END


  Mrv1652309072221492D          

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   12.5794   -5.7551    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.1195   -6.3787    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9296   -6.2228    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.8494   -7.1583    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   13.3895   -7.7819    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1996   -7.6260    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4697   -6.8465    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   14.7397   -8.2497    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5499   -8.0938    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8199   -7.3142    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.0900   -8.7174    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.9001   -8.5615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0181   -3.5724    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8283   -3.4164    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
 10  9  1  4  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 16 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  4  0  0  0
 19 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  2  0  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  2  0  0  0  0
 28 29  1  4  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  2  0  0  0  0
 33 35  1  0  0  0  0
 35 36  1  0  0  0  0
  8 37  1  0  0  0  0
 37 38  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0255358

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCC(CC=CCCC(=O)N(C)CC(CC(=O)CC(O)=NCC(O)CC(=O)OC)=CCl)OC

> <INCHI_IDENTIFIER>
InChI=1S/C28H47ClN2O7/c1-5-6-7-8-10-13-25(37-3)14-11-9-12-15-27(35)31(2)21-22(19-29)16-23(32)17-26(34)30-20-24(33)18-28(36)38-4/h9,11,19,24-25,33H,5-8,10,12-18,20-21H2,1-4H3,(H,30,34)

> <INCHI_KEY>
FGRVZQUFZGRBFK-UHFFFAOYSA-N

> <FORMULA>
C28H47ClN2O7

> <MOLECULAR_WEIGHT>
559.14

> <EXACT_MASS>
558.3071796

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
85

> <JCHEM_AVERAGE_POLARIZABILITY>
61.78620140666047

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-chloro-N-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-N-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid

> <JCHEM_LOGP>
3.454783697402933

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.703352614734186

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.819115042784426

> <JCHEM_PKA_STRONGEST_BASIC>
4.908170689357106

> <JCHEM_POLAR_SURFACE_AREA>
125.73000000000002

> <JCHEM_REFRACTIVITY>
150.19859999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
23

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
6-chloro-N-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-N-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.210  -5.795   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.302  -5.504   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       2.310  -6.668   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       3.822  -6.377   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.830  -7.541   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.343  -7.250   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.351  -8.415   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       8.863  -8.124   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       9.871  -9.288   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      11.383  -8.997   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.392 -10.161   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.904  -9.870   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      14.912 -11.034   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      16.424 -10.743   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      16.928  -9.288   0.000  0.00  0.00           O+0
HETATM   16  N   UNK     0      17.432 -11.907   0.000  0.00  0.00           N+0
HETATM   17  C   UNK     0      16.928 -13.362   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      18.945 -11.616   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      19.953 -12.780   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      19.449 -14.235   0.000  0.00  0.00           C+0
HETATM   21 Cl   UNK     0      17.937 -14.526   0.000  0.00  0.00          Cl+0
HETATM   22  C   UNK     0      21.465 -12.489   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      21.969 -11.034   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      20.961  -9.870   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      23.481 -10.743   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      24.490 -11.907   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0      26.002 -11.616   0.000  0.00  0.00           O+0
HETATM   28  N   UNK     0      23.986 -13.362   0.000  0.00  0.00           N+0
HETATM   29  C   UNK     0      24.994 -14.526   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      26.506 -14.235   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      27.010 -12.780   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      27.514 -15.399   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      29.026 -15.108   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      29.530 -13.653   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      30.035 -16.272   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      31.547 -15.981   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       9.367  -6.668   0.000  0.00  0.00           O+0
HETATM   38  C   UNK     0      10.879  -6.377   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   37                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   22                                                  
CONECT   20   19   21                                                       
CONECT   21   20                                                            
CONECT   22   19   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36                                                       
CONECT   36   35                                                            
CONECT   37    8   38                                                       
CONECT   38   37                                                            
MASTER        0    0    0    0    0    0    0    0   38    0   74    0
END

View in JSmol

Synonyms

Value	Source
6-Chloro-N-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-N-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidate	Generator

Chemical Formula

C₂₈H₄₇ClN₂O₇

Average Mass

559.1400 Da

Monoisotopic Mass

558.30718 Da

IUPAC Name

6-chloro-N-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-N-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid

Traditional Name

6-chloro-N-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-N-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid

CAS Registry Number

Not Available

SMILES

CCCCCCCC(CC=CCCC(=O)N(C)CC(CC(=O)CC(O)=NCC(O)CC(=O)OC)=CCl)OC

InChI Identifier

InChI=1S/C28H47ClN2O7/c1-5-6-7-8-10-13-25(37-3)14-11-9-12-15-27(35)31(2)21-22(19-29)16-23(32)17-26(34)30-20-24(33)18-28(36)38-4/h9,11,19,24-25,33H,5-8,10,12-18,20-21H2,1-4H3,(H,30,34)

InChI Key

FGRVZQUFZGRBFK-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gamma amino acids and derivatives. These are amino acids having a (-NH2) group attached to the gamma carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

Gamma amino acids and derivatives

Alternative Parents

Substituents

Gamma amino acid or derivatives
Beta-hydroxy acid
Fatty acid ester
Fatty acid methyl ester
Beta-hydroxy ketone
Fatty acyl
Hydroxy acid
N-acyl-amine
Methyl ester
Tertiary carboxylic acid amide
Carboxamide group
Carboxylic acid ester
Ketone
Secondary alcohol
Carboximidic acid
Carboximidic acid derivative
Dialkyl ether
Ether
Chloroalkene
Haloalkene
Organic 1,3-dipolar compound
Propargyl-type 1,3-dipolar organic compound
Monocarboxylic acid or derivatives
Vinyl halide
Vinyl chloride
Carbonyl group
Alcohol
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Organohalogen compound
Organochloride
Organonitrogen compound
Organooxygen compound
Organic oxygen compound
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.45	ChemAxon
pKa (Strongest Acidic)	2.82	ChemAxon
pKa (Strongest Basic)	4.91	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	125.73 Å²	ChemAxon
Rotatable Bond Count	23	ChemAxon
Refractivity	150.2 m³·mol⁻¹	ChemAxon
Polarizability	61.79 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

75972017

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid (NP0255358)

MOL for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

3D MOL for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

3D SDF for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

3D-SDF for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

PDB for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

3D PDB for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

SMILES for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

INCHI for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

Structure for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)

3D Structure for NP0255358 (6-chloro-n-(2-hydroxy-4-methoxy-4-oxobutyl)-5-[(7-methoxy-n-methyltetradec-4-enamido)methyl]-3-oxohex-5-enimidic acid)