NP-MRD: Showing NP-Card for 2-methyl-4-(3h-purin-6-ylamino)butan-1-ol (NP0255224)

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Record Information

Version

2.0

Created at

2022-09-07 19:38:36 UTC

Updated at

2022-09-07 19:38:37 UTC

NP-MRD ID

NP0255224

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2-methyl-4-(3h-purin-6-ylamino)butan-1-ol

Description

2-methyl-4-(3h-purin-6-ylamino)butan-1-ol is found in Pseudomonas amygdali.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 32  0  0  0  0  0  0  0  0999 V2000
   -3.5974    0.8756    0.0306 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7102   -0.3238    0.2402 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.2134   -1.4798   -0.6361 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1877   -1.1275   -1.9781 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3164   -0.0044   -0.2496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6971    1.1502    0.4634 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6229    1.3587   -0.0930 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.6762    0.4169   -0.0307 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5474   -0.7800    0.5739 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.5376   -1.6726    0.6418 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7526   -1.4609    0.1144 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0141   -0.2925   -0.5238 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0719    0.2511   -1.1509 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.7043    1.4772   -1.5941 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4145    1.7229   -1.2541 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.9131    0.6703   -0.5854 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6274    0.5835   -0.2558 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6317    1.4910    0.9352 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1546    1.4672   -0.8154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6298   -0.6446    1.2868 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2331   -1.7791   -0.3669 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4777   -2.3287   -0.5299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8698   -1.6252   -2.4996 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7103   -0.9082   -0.0578 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3896    0.2495   -1.3180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5151    0.9196    1.5559 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2967    2.0850    0.3667 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250    2.2674   -0.5789 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3639   -2.6081    1.1402 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5194   -2.1513    0.1666 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2949    2.2008   -2.1406 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  2  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8 16  2  0
 16 15  1  0
 15 14  2  0
 14 13  1  0
 13 12  2  0
 12 11  1  0
 11 10  1  0
 10  9  2  0
  9  8  1  0
 12 16  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  1
  3 21  1  0
  3 22  1  0
  4 23  1  0
  5 24  1  0
  5 25  1  0
  6 26  1  0
  6 27  1  0
  7 28  1  0
 14 31  1  0
 11 30  1  0
 10 29  1  0
M  END


  Mrv1652305221920002D          

 16 17  0  0  0  0            999 V2000
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7065    2.1307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.0420    1.3770    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8860    2.0445    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  2  1  0  0  0  0
  7  1  1  0  0  0  0
  7  2  1  0  0  0  0
  7  4  1  0  0  0  0
  9  8  2  0  0  0  0
 10  8  1  0  0  0  0
 11  3  1  0  0  0  0
 11  9  1  0  0  0  0
 12  5  2  0  0  0  0
 12  8  1  0  0  0  0
 13  5  1  0  0  0  0
 13 10  2  0  0  0  0
 14  6  2  0  0  0  0
 14  9  1  0  0  0  0
 15  6  1  0  0  0  0
 15 10  1  0  0  0  0
 16  4  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0255224

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(CO)CCNC1=C2N=CN=C2NC=N1

> <INCHI_IDENTIFIER>
InChI=1S/C10H15N5O/c1-7(4-16)2-3-11-9-8-10(13-5-12-8)15-6-14-9/h5-7,16H,2-4H2,1H3,(H2,11,12,13,14,15)

> <INCHI_KEY>
XXFACTAYGKKOQB-UHFFFAOYSA-N

> <FORMULA>
C10H15N5O

> <MOLECULAR_WEIGHT>
221.259

> <EXACT_MASS>
221.127660127

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
23.68020165130483

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2-methyl-4-[(3H-purin-6-yl)amino]butan-1-ol

> <ALOGPS_LOGP>
-0.36

> <JCHEM_LOGP>
0.022884575666666813

> <ALOGPS_LOGS>
-2.69

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
15.477907411622198

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.552529911234661

> <JCHEM_PKA_STRONGEST_BASIC>
3.0286256312120057

> <JCHEM_POLAR_SURFACE_AREA>
86.72000000000001

> <JCHEM_REFRACTIVITY>
62.366599999999984

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.55e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-methyl-4-(3H-purin-6-ylamino)butan-1-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 22-MAY-19   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   22-MAY-19         0                                  
HETATM    1  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       9.336  -0.770   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.185   3.977   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.002   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       4.001  -0.770   0.000  0.00  0.00           N+0
HETATM   12  N   UNK     0       3.812   2.570   0.000  0.00  0.00           N+0
HETATM   13  N   UNK     0       1.654   3.816   0.000  0.00  0.00           N+0
HETATM   14  N   UNK     0       1.334  -0.770   0.000  0.00  0.00           N+0
HETATM   15  N   UNK     0       0.000   1.540   0.000  0.00  0.00           N+0
HETATM   16  O   UNK     0      10.669   0.000   0.000  0.00  0.00           O+0
CONECT    1    7                                                            
CONECT    2    3    7                                                       
CONECT    3    2   11                                                       
CONECT    4    7   16                                                       
CONECT    5   12   13                                                       
CONECT    6   14   15                                                       
CONECT    7    1    2    4                                                  
CONECT    8    9   10   12                                                  
CONECT    9    8   11   14                                                  
CONECT   10    8   13   15                                                  
CONECT   11    3    9                                                       
CONECT   12    5    8                                                       
CONECT   13    5   10                                                       
CONECT   14    6    9                                                       
CONECT   15    6   10                                                       
CONECT   16    4                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₀H₁₅N₅O

Average Mass

221.2590 Da

Monoisotopic Mass

221.12766 Da

IUPAC Name

2-methyl-4-[(3H-purin-6-yl)amino]butan-1-ol

Traditional Name

2-methyl-4-(3H-purin-6-ylamino)butan-1-ol

CAS Registry Number

Not Available

SMILES

CC(CO)CCNC1=C2N=CN=C2NC=N1

InChI Identifier

InChI=1S/C10H15N5O/c1-7(4-16)2-3-11-9-8-10(13-5-12-8)15-6-14-9/h5-7,16H,2-4H2,1H3,(H2,11,12,13,14,15)

InChI Key

XXFACTAYGKKOQB-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Pseudomonas amygdali	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 6-alkylaminopurines. 6-Alkylaminopurines are compounds that contain an alkylamine group attached at the 6-position of a purine. Purine is a bicyclic aromatic compound made up of a pyrimidine ring fused to an imidazole ring.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Imidazopyrimidines

Sub Class

Purines and purine derivatives

Direct Parent

6-alkylaminopurines

Alternative Parents

Substituents

6-alkylaminopurine
Aminopyrimidine
Secondary aliphatic/aromatic amine
Pyrimidine
Imidolactam
Azole
Imidazole
Heteroaromatic compound
Secondary amine
Azacycle
Organopnictogen compound
Organic oxygen compound
Primary alcohol
Organooxygen compound
Organonitrogen compound
Amine
Alcohol
Hydrocarbon derivative
Organic nitrogen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

a small molecule (CPD-332 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.36	ALOGPS
logP	0.023	ChemAxon
logS	-2.7	ALOGPS
pKa (Strongest Acidic)	5.55	ChemAxon
pKa (Strongest Basic)	3.03	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	86.72 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	62.37 m³·mol⁻¹	ChemAxon
Polarizability	23.68 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB001400

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

32021

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2-methyl-4-(3h-purin-6-ylamino)butan-1-ol (NP0255224)

MOL for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

3D MOL for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

3D SDF for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

3D-SDF for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

PDB for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

3D PDB for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

SMILES for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

INCHI for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

Structure for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)

3D Structure for NP0255224 (2-methyl-4-(3h-purin-6-ylamino)butan-1-ol)