NP-MRD: Showing NP-Card for (2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal (NP0255222)

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Record Information

Version

1.0

Created at

2022-09-07 19:38:28 UTC

Updated at

2022-09-07 19:38:28 UTC

NP-MRD ID

NP0255222

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal

Description

Akagerine belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety. (2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal is found in Strychnos decussata and Strychnos spinosa. It was first documented in 2003 (PMID: 14559288). Based on a literature review very few articles have been published on Akagerine (PMID: 34854134).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072221382D          

 24 27  0  0  1  0            999 V2000
   -0.3962    0.4218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5815   -0.3821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0221   -0.9445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1631   -1.7485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4405   -2.3109    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8110   -0.7030    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9357    0.1125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6510    0.5235    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4183    0.2205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0939    0.6940    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7530    0.1977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5628    0.3555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1043   -0.2670    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8360   -1.0471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0262   -1.2049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4847   -0.5824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6599   -0.5684    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1937   -1.2490    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6047   -1.9644    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3709   -1.3090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0217    1.5158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2739    1.8642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5983    1.3907    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8552    1.7491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  6  3  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
  6 20  1  0  0  0  0
 10 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  8 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END

     RDKit          3D

 48 51  0  0  0  0  0  0  0  0999 V2000
   -4.2969   -1.5745   -1.2849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1202   -1.1082    0.0706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0621   -0.6010    0.5841 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1005   -0.1721    2.0304 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1509   -0.3259    2.6583 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7732   -0.4361   -0.0635 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.4396    1.0884   -0.1433 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1514    1.2960    0.5355 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8829    0.3292    0.0858 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1154    0.5003    0.6826 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9326   -0.4553    0.1422 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2697   -0.6892    0.4168 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8993   -1.7138   -0.2579 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2069   -2.4575   -1.1607 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8554   -2.1884   -1.4096 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1859   -1.1650   -0.7498 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9077   -0.6750   -0.7829 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0278   -1.3000   -1.6572 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.1622   -2.7001   -1.5081 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4883   -0.9559   -1.4014 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2230    1.5827    1.6760 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4738    2.8140    1.3013 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4273    2.6111    0.3213 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5443    3.6730    0.5080 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9447   -0.9624   -2.1095 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4464   -1.5287   -1.4552 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1417   -2.6832   -1.4022 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9947   -1.1914    0.7810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2270    0.2492    2.4708 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0276   -0.9326    0.6348 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3676    1.4070   -1.2130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2961    1.5991    0.3145 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2754    1.2103    1.6315 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7865   -0.0741    1.1433 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9469   -1.8950   -0.0407 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6951   -3.2586   -1.6898 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3442   -2.7902   -2.1306 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2683   -1.0925   -2.7044 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0135   -2.9684   -0.5858 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7503   -0.2770   -2.2405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9868   -1.9684   -1.4889 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2757    1.8353    1.9203 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8072    1.1596    2.6385 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9769    3.2133    2.2323 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2040    3.5826    0.9838 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0716    4.5925    0.0567 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6335    3.9312    1.6038 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5152    3.4659    0.0557 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  2  0
  3  4  1  0
  4  5  2  0
  3  6  1  0
  6  7  1  0
  7  8  1  0
  8 23  1  0
 23 24  1  0
 23 22  1  0
 22 21  1  0
 21 10  1  0
 10  9  2  0
  9 17  1  0
 17 18  1  0
 18 19  1  0
 18 20  1  0
 17 16  1  0
 16 15  2  0
 15 14  1  0
 14 13  2  0
 13 12  1  0
 12 11  2  0
 20  6  1  0
 11 16  1  0
  9  8  1  0
 11 10  1  0
  1 25  1  0
  1 26  1  0
  1 27  1  0
  2 28  1  0
  4 29  1  0
  6 30  1  1
  7 31  1  0
  7 32  1  0
  8 33  1  1
 24 46  1  0
 24 47  1  0
 24 48  1  0
 22 44  1  0
 22 45  1  0
 21 42  1  0
 21 43  1  0
 18 38  1  6
 19 39  1  0
 20 40  1  0
 20 41  1  0
 15 37  1  0
 14 36  1  0
 13 35  1  0
 12 34  1  0
M  END


  Mrv1652309072221382D          

 24 27  0  0  1  0            999 V2000
   -0.3962    0.4218    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5815   -0.3821    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0221   -0.9445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1631   -1.7485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4405   -2.3109    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8110   -0.7030    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9357    0.1125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6510    0.5235    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.4183    0.2205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0939    0.6940    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7530    0.1977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5628    0.3555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1043   -0.2670    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8360   -1.0471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0262   -1.2049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4847   -0.5824    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6599   -0.5684    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.1937   -1.2490    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6047   -1.9644    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3709   -1.3090    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0217    1.5158    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2739    1.8642    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5983    1.3907    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.8552    1.7491    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  2  0  0  0  0
  3  4  1  0  0  0  0
  4  5  2  0  0  0  0
  6  3  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  6  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 11 16  1  0  0  0  0
 16 17  1  0  0  0  0
  9 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 18 20  1  0  0  0  0
  6 20  1  0  0  0  0
 10 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
  8 23  1  0  0  0  0
 23 24  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0255222

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C\C=C(\C=O)[C@@H]1C[C@@H]2N(C)CCC3=C2N([C@@H](O)C1)C1=CC=CC=C31

> <INCHI_IDENTIFIER>
InChI=1S/C20H24N2O2/c1-3-13(12-23)14-10-18-20-16(8-9-21(18)2)15-6-4-5-7-17(15)22(20)19(24)11-14/h3-7,12,14,18-19,24H,8-11H2,1-2H3/b13-3-/t14-,18+,19+/m1/s1

> <INCHI_KEY>
LGSDYQBPJKYJCT-YTLNUPAMSA-N

> <FORMULA>
C20H24N2O2

> <MOLECULAR_WEIGHT>
324.424

> <EXACT_MASS>
324.183778021

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
36.601479046836616

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2E)-2-[(5S,7R,9S)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0^{5,17}.0^{11,16}]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal

> <JCHEM_LOGP>
2.6048504536666663

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
13.325772839144843

> <JCHEM_PKA_STRONGEST_BASIC>
6.360397386020954

> <JCHEM_POLAR_SURFACE_AREA>
45.470000000000006

> <JCHEM_REFRACTIVITY>
96.66449999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-2-[(5S,7R,9S)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0^{5,17}.0^{11,16}]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -0.740   0.787   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.085  -0.713   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.041  -1.763   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.305  -3.264   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       0.822  -4.314   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       1.514  -1.312   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       1.747   0.210   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.082   0.977   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.514   0.412   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.775   1.295   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.006   0.369   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.517   0.664   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.528  -0.498   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       9.027  -1.955   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.516  -2.249   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       6.505  -1.087   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       4.965  -1.061   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0       4.095  -2.332   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.862  -3.667   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       2.559  -2.443   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.641   2.829   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.245   3.480   0.000  0.00  0.00           C+0
HETATM   23  N   UNK     0       2.983   2.596   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       1.596   3.265   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    6                                                  
CONECT    4    3    5                                                       
CONECT    5    4                                                            
CONECT    6    3    7   20                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   23                                                  
CONECT    9    8   10   17                                                  
CONECT   10    9   11   21                                                  
CONECT   11   10   12   16                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   11   17                                                  
CONECT   17   16    9   18                                                  
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18    6                                                       
CONECT   21   10   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22    8   24                                                  
CONECT   24   23                                                            
MASTER        0    0    0    0    0    0    0    0   24    0   54    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₀H₂₄N₂O₂

Average Mass

324.4240 Da

Monoisotopic Mass

324.18378 Da

IUPAC Name

(2E)-2-[(5S,7R,9S)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0^{5,17}.0^{11,16}]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal

Traditional Name

(2E)-2-[(5S,7R,9S)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0^{5,17}.0^{11,16}]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal

CAS Registry Number

Not Available

SMILES

C\C=C(\C=O)[C@@H]1C[C@@H]2N(C)CCC3=C2N([C@@H](O)C1)C1=CC=CC=C31

InChI Identifier

InChI=1S/C20H24N2O2/c1-3-13(12-23)14-10-18-20-16(8-9-21(18)2)15-6-4-5-7-17(15)22(20)19(24)11-14/h3-7,12,14,18-19,24H,8-11H2,1-2H3/b13-3-/t14-,18+,19+/m1/s1

InChI Key

LGSDYQBPJKYJCT-YTLNUPAMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Strychnos decussata	LOTUS Database	35616633
Strychnos spinosa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as beta carbolines. Beta carbolines are compounds containing a 9H-pyrido[3,4-b]indole moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Indoles and derivatives

Sub Class

Pyridoindoles

Direct Parent

Beta carbolines

Alternative Parents

Substituents

Beta-carboline
Pyrroloazepine
3-alkylindole
Indole
Azepine
Aralkylamine
Benzenoid
Alpha,beta-unsaturated aldehyde
Heteroaromatic compound
Enal
Pyrrole
Tertiary aliphatic amine
Tertiary amine
Azacycle
Alkanolamine
Organonitrogen compound
Organopnictogen compound
Organic oxygen compound
Carbonyl group
Organic nitrogen compound
Hydrocarbon derivative
Amine
Organic oxide
Organooxygen compound
Aldehyde
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.6	ChemAxon
pKa (Strongest Acidic)	13.33	ChemAxon
pKa (Strongest Basic)	6.36	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	45.47 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	96.66 m³·mol⁻¹	ChemAxon
Polarizability	36.6 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00036032

Chemspider ID

558781

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

643662

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Thongphasuk P, Suttisri R, Bavovada R, Verpoorte R: Alkaloids and a pimarane diterpenoid from Strychnos vanprukii. Phytochemistry. 2003 Oct;64(4):897-901. doi: 10.1016/s0031-9422(03)00508-9. [PubMed:14559288 ]
Sakamoto J, Ishikawa H: Bioinspired Transformations Using Strictosidine Aglycones: Divergent Total Syntheses of Monoterpenoid Indole Alkaloids in the Early Stage of Biosynthesis. Chemistry. 2022 Feb 21;28(10):e202104052. doi: 10.1002/chem.202104052. Epub 2021 Dec 21. [PubMed:34854134 ]
LOTUS database [Link]

Showing NP-Card for (2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal (NP0255222)

MOL for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

3D MOL for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

3D SDF for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

3D-SDF for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

PDB for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

3D PDB for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

SMILES for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

INCHI for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

Structure for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)

3D Structure for NP0255222 ((2e)-2-[(5s,7r,9s)-9-hydroxy-4-methyl-4,10-diazatetracyclo[8.6.1.0⁵,¹⁷.0¹¹,¹⁶]heptadeca-1(17),11,13,15-tetraen-7-yl]but-2-enal)