NP-MRD: Showing NP-Card for 4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid (NP0255180)

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Record Information

Version

1.0

Created at

2022-09-07 19:34:58 UTC

Updated at

2022-09-07 19:34:58 UTC

NP-MRD ID

NP0255180

Secondary Accession Numbers

None

Natural Product Identification

Common Name

4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid

Description

4-[(3R)-3-carboxy-3-methylpropoxy]benzoic acid belongs to the class of organic compounds known as benzoic acids. These are organic Compounds containing a benzene ring which bears at least one carboxyl group. 4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid is found in Sporormiella vexans. It was first documented in 2002 (PMID: 35412727). Based on a literature review a significant number of articles have been published on 4-[(3R)-3-carboxy-3-methylpropoxy]benzoic acid (PMID: 36099392) (PMID: 31661213) (PMID: 31593386) (PMID: 29589881).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 31  0  0  0  0  0  0  0  0999 V2000
   -3.2641    1.7071   -0.0475 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5799    0.4202    0.3751 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0591   -0.2585   -0.8734 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3524   -1.5467   -0.6285 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2493   -1.5376    0.1785 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9716   -0.9370    0.0929 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3494   -0.1551   -0.9625 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6093    0.4518   -1.0231 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5232    0.2817   -0.0129 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8236    0.9186   -0.0935 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6465    0.7496    0.8435 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1475    1.7014   -1.1914 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1320   -0.5091    1.0462 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9092   -1.1049    1.1172 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5274   -0.4632    1.0598 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7422   -0.1053    1.1556 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1531   -1.6635    1.6021 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3712    1.5684    0.0362 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0556    1.9378   -1.1004 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9572    2.5270    0.6436 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7396    0.6401    1.0373 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9711   -0.5263   -1.4978 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4903    0.4982   -1.4281 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0551   -2.3580   -0.2995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0644   -1.9131   -1.6757 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7237    0.0318   -1.8033 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8794    1.0655   -1.8713 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4557    2.6613   -1.0845 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8673   -0.6372    1.8432 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6169   -1.7197    1.9498 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0234   -1.7253    2.6122 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 13  1  0
 13 14  2  0
  9 10  1  0
 10 12  1  0
 10 11  2  0
  2 15  1  0
 15 17  1  0
 15 16  2  0
 14  6  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  2 21  1  1
  3 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  7 26  1  0
  8 27  1  0
 13 29  1  0
 14 30  1  0
 12 28  1  0
 17 31  1  0
M  END


  Mrv1652309072221342D          

 17 17  0  0  1  0            999 V2000
    2.8579   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -0.8250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1434   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579   -0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
  9 13  1  0  0  0  0
 13 14  2  0  0  0  0
  6 14  1  0  0  0  0
  2 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0255180

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H](CCOC1=CC=C(C=C1)C(O)=O)C(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C12H14O5/c1-8(11(13)14)6-7-17-10-4-2-9(3-5-10)12(15)16/h2-5,8H,6-7H2,1H3,(H,13,14)(H,15,16)/t8-/m1/s1

> <INCHI_KEY>
NXKQNSVRERFPAM-MRVPVSSYSA-N

> <FORMULA>
C12H14O5

> <MOLECULAR_WEIGHT>
238.239

> <EXACT_MASS>
238.084123551

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
24.01088361111068

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-[(3R)-3-carboxy-3-methylpropoxy]benzoic acid

> <JCHEM_LOGP>
2.0198009863333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
4.492911064274911

> <JCHEM_PKA_STRONGEST_ACIDIC>
3.776404532991984

> <JCHEM_PKA_STRONGEST_BASIC>
-4.861349063108839

> <JCHEM_POLAR_SURFACE_AREA>
83.83

> <JCHEM_REFRACTIVITY>
59.8909

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
4-[(3R)-3-carboxy-3-methylpropoxy]benzoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       5.335  -0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.335  -1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       4.001  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667  -1.540   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       1.334  -2.310   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       0.000  -1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -2.667  -1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -4.001   0.770   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      -4.001   2.310   0.000  0.00  0.00           O+0
HETATM   12  O   UNK     0      -5.335  -0.000   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -1.334   0.770   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000  -0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.668  -2.310   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       8.002  -1.540   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0       6.668  -3.850   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   15                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   14                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   13                                                  
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13    9   14                                                       
CONECT   14   13    6                                                       
CONECT   15    2   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15                                                            
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

View in JSmol

Synonyms

Value	Source
4-[(3R)-3-Carboxy-3-methylpropoxy]benzoate	Generator

Chemical Formula

C₁₂H₁₄O₅

Average Mass

238.2390 Da

Monoisotopic Mass

238.08412 Da

IUPAC Name

4-[(3R)-3-carboxy-3-methylpropoxy]benzoic acid

Traditional Name

4-[(3R)-3-carboxy-3-methylpropoxy]benzoic acid

CAS Registry Number

Not Available

SMILES

C[C@H](CCOC1=CC=C(C=C1)C(O)=O)C(O)=O

InChI Identifier

InChI=1S/C12H14O5/c1-8(11(13)14)6-7-17-10-4-2-9(3-5-10)12(15)16/h2-5,8H,6-7H2,1H3,(H,13,14)(H,15,16)/t8-/m1/s1

InChI Key

NXKQNSVRERFPAM-MRVPVSSYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Sporormiella vexans	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzoic acids. These are organic Compounds containing a benzene ring which bears at least one carboxyl group.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzoic acids and derivatives

Direct Parent

Benzoic acids

Alternative Parents

Substituents

Benzoic acid
Phenoxy compound
Phenol ether
Benzoyl
Alkyl aryl ether
Dicarboxylic acid or derivatives
Ether
Carboxylic acid
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.02	ChemAxon
pKa (Strongest Acidic)	3.78	ChemAxon
pKa (Strongest Basic)	-4.9	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	83.83 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	59.89 m³·mol⁻¹	ChemAxon
Polarizability	24.01 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163047998

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Freebody J: "The Root of All Evil is Inactivity": The Response of French Psychiatrists to New Approaches to Patient Work and Occupation, 1918-1939. 2021. [PubMed:36099392 ]
Authors unspecified: Childhood Pulmonary Inflammatory Myofibroblastic Tumors Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:35412727 ]
Authors unspecified: Childhood Adrenocortical Carcinoma Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:31661213 ]
Authors unspecified: Childhood Breast Tumors Treatment (PDQ(R)): Health Professional Version. 2002. [PubMed:31593386 ]
Authors unspecified: Cognitive Impairment in Adults with Non-Central Nervous System Cancers (PDQ(R)): Patient Version. 2002. [PubMed:29589881 ]
LOTUS database [Link]

Showing NP-Card for 4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid (NP0255180)

MOL for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

3D MOL for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

3D SDF for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

3D-SDF for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

PDB for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

3D PDB for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

SMILES for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

INCHI for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

Structure for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)

3D Structure for NP0255180 (4-[(3r)-3-carboxy-3-methylpropoxy]benzoic acid)