NP-MRD: Showing NP-Card for bipindogenin (NP0254636)

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Record Information

Version

2.0

Created at

2022-09-07 18:52:00 UTC

Updated at

2022-09-07 18:52:00 UTC

NP-MRD ID

NP0254636

Secondary Accession Numbers

None

Natural Product Identification

Common Name

bipindogenin

Description

Bipindogenin, also known as nigrescigenin, belongs to the class of organic compounds known as cardenolides and derivatives. These are steroid lactones containing a furan-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative. Thus, bipindogenin is considered to be a sterol. bipindogenin is found in Chrysolina herbacea and Erysimum diffusum. Based on a literature review very few articles have been published on bipindogenin.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072220522D          

 29 33  0  0  1  0            999 V2000
    4.5466   -0.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8269    0.2673    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3587   -0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1708   -0.2182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4511    0.5577    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2632    0.7029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9193    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1072    1.0432    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3875    1.8191    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5754    1.6739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7633    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    0.7528    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0148    0.1221    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7345   -0.6539    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2663   -1.2846    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9224   -0.7991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3905   -0.1684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0307   -0.9107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5660   -0.1416    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0596   -0.7929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2889   -1.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6061   -2.0484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5793   -2.8729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0452   -1.5420    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2351   -0.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0195    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6708    0.6076    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8685    1.4085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  2  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 12 11  1  6  0  0  0
 13 12  1  1  0  0  0
  2 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 20 25  1  0  0  0  0
 19 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 12 28  1  0  0  0  0
 17 28  1  0  0  0  0
 28 29  1  1  0  0  0
M  END

     RDKit          3D

 63 67  0  0  0  0  0  0  0  0999 V2000
    2.1904    0.2289   -1.9164 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2264    0.3124   -0.3855 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8563    1.6346   -0.0466 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3813    1.5248   -0.1490 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8373    0.6922    1.0049 C   0  0  2  0  0  0  0  0  0  0  0  0
    6.0961    0.1496    0.7999 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.8022   -0.3116    1.3638 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0597   -0.8571    0.1347 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.9947   -1.2493   -0.8315 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2328   -1.9931    0.6197 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9789   -2.2490   -0.1414 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2180   -1.0241   -0.5161 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.8484    0.1431    0.1980 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.0202    1.3631    0.2271 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.3852    1.7047    1.5388 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1966    1.3167   -0.6509 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0396    0.0850   -0.5006 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.8767   -0.0305   -1.7564 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9898    0.1767    0.6691 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.2933    0.7586    0.3740 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4570    0.1474    0.5171 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5293    1.0450    0.1246 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7871    0.7889    0.1337 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9467    2.2355   -0.2641 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5477    2.1278   -0.1230 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1014   -1.2950    1.0851 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6005   -1.6344    1.1107 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2403   -1.1672   -0.2862 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7174   -2.1616   -1.1409 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2912   -0.8082   -2.2721 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.3286    0.7730   -2.3351 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0995    0.7682   -2.3017 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5915    2.4167   -0.8180 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6266    1.9730    0.9701 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7050    1.0465   -1.0756 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8299    2.5465   -0.1409 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9450    1.3899    1.8861 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.4313    0.2394   -0.1103 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0020    0.2164    1.9607 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2551   -1.1207    1.9548 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8281   -1.5882   -0.3823 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8665   -2.9254    0.5447 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9949   -1.9254    1.7198 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3311   -2.9059    0.4839 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2210   -2.8766   -1.0465 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3594   -0.8730   -1.6206 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0042   -0.1957    1.2642 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6332    2.2231   -0.1155 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0082    1.0348    2.1521 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8304    2.1897   -0.3284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8876    1.4320   -1.6922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9532   -0.1095   -1.5663 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5844   -0.9580   -2.3235 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7037    0.8323   -2.4658 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5218    0.6807    1.5446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6380   -0.8758    0.8726 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0743    2.2306   -1.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1510    2.8743    0.6030 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5560   -1.4161    2.0661 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5393   -1.8849    0.2747 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5652   -2.7402    1.2120 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0735   -1.0929    1.9015 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3079   -3.0328   -0.9236 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 18  1  6
 17 16  1  0
 16 14  1  0
 14 15  1  0
 14 13  1  0
 13 12  1  0
 12 11  1  0
 11 10  1  0
 10  8  1  0
  8  9  1  6
  8  7  1  0
  7  5  1  0
  5  6  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  1  6
 12 28  1  0
 28 29  1  6
 28 27  1  0
 27 26  1  0
 26 19  1  0
 19 20  1  0
 20 21  2  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 28 17  1  0
 25 20  1  0
 19 17  1  0
  2 13  1  0
  2  8  1  0
 18 52  1  0
 18 53  1  0
 18 54  1  0
 16 50  1  0
 16 51  1  0
 14 48  1  6
 15 49  1  0
 13 47  1  1
 12 46  1  6
 11 44  1  0
 11 45  1  0
 10 42  1  0
 10 43  1  0
  9 41  1  0
  7 39  1  0
  7 40  1  0
  5 37  1  1
  6 38  1  0
  4 35  1  0
  4 36  1  0
  3 33  1  0
  3 34  1  0
  1 30  1  0
  1 31  1  0
  1 32  1  0
 29 63  1  0
 27 61  1  0
 27 62  1  0
 26 59  1  0
 26 60  1  0
 19 55  1  1
 21 56  1  0
 25 57  1  0
 25 58  1  0
M  END


  Mrv1652309072220522D          

 29 33  0  0  1  0            999 V2000
    4.5466   -0.5086    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8269    0.2673    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3587   -0.3634    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1708   -0.2182    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4511    0.5577    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.2632    0.7029    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9193    1.1884    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1072    1.0432    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.3875    1.8191    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5754    1.6739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7633    1.5287    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4830    0.7528    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.0148    0.1221    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7345   -0.6539    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.2663   -1.2846    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9224   -0.7991    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3905   -0.1684    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.0307   -0.9107    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5660   -0.1416    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0596   -0.7929    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2889   -1.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6061   -2.0484    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5793   -2.8729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0452   -1.5420    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2351   -0.7661    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3367    0.6509    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0195    1.1139    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6708    0.6076    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.8685    1.4085    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  1  0  0  0  0
  2  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
 10 11  1  0  0  0  0
 12 11  1  6  0  0  0
 13 12  1  1  0  0  0
  2 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  6  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  1  0  0  0
 17 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 20 25  1  0  0  0  0
 19 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 12 28  1  0  0  0  0
 17 28  1  0  0  0  0
 28 29  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0254636

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]12C[C@@H](O)[C@H]3[C@@H](CC[C@]4(O)C[C@@H](O)CC[C@]34C)[C@@]1(O)CC[C@@H]2C1=CC(=O)OC1

> <INCHI_IDENTIFIER>
InChI=1S/C23H34O6/c1-20-6-3-14(24)10-22(20,27)7-4-16-19(20)17(25)11-21(2)15(5-8-23(16,21)28)13-9-18(26)29-12-13/h9,14-17,19,24-25,27-28H,3-8,10-12H2,1-2H3/t14-,15+,16+,17+,19+,20+,21+,22-,23-/m0/s1

> <INCHI_KEY>
HHMGMLUGGZMHCB-YOZMPFPMSA-N

> <FORMULA>
C23H34O6

> <MOLECULAR_WEIGHT>
406.519

> <EXACT_MASS>
406.235538815

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
63

> <JCHEM_AVERAGE_POLARIZABILITY>
43.68831558250919

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
4

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
4-[(1S,2R,5S,7S,10R,11S,14R,15R,17R)-5,7,11,17-tetrahydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl]-2,5-dihydrofuran-2-one

> <JCHEM_LOGP>
0.5264960190000001

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.845959132571824

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.181450865546639

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7258861504403695

> <JCHEM_POLAR_SURFACE_AREA>
107.22

> <JCHEM_REFRACTIVITY>
106.71759999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
4-[(1S,2R,5S,7S,10R,11S,14R,15R,17R)-5,7,11,17-tetrahydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl]-5H-furan-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       8.487  -0.949   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.010   0.499   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      10.003  -0.678   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      11.519  -0.407   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.042   1.041   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      13.558   1.312   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      11.049   2.218   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       9.533   1.947   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      10.057   3.396   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       8.541   3.125   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.025   2.854   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       6.502   1.405   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.494   0.228   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.971  -1.221   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       7.964  -2.398   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       5.455  -1.492   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.462  -0.314   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       3.791  -1.700   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.923  -0.264   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.978  -1.480   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       2.406  -2.959   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.131  -3.824   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       1.081  -5.363   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      -0.084  -2.878   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       0.439  -1.430   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       2.495   1.215   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       3.770   2.079   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.986   1.134   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       5.355   2.629   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    8   13                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    2    9   10                                             
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   28                                                  
CONECT   13   12    2   14                                                  
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   19   28                                             
CONECT   18   17                                                            
CONECT   19   17   20   26                                                  
CONECT   20   19   21   25                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   20                                                       
CONECT   26   19   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   12   17   29                                             
CONECT   29   28                                                            
MASTER        0    0    0    0    0    0    0    0   29    0   66    0
END

View in JSmol

Synonyms

Value	Source
Nigrescigenin	MeSH

Chemical Formula

C₂₃H₃₄O₆

Average Mass

406.5190 Da

Monoisotopic Mass

406.23554 Da

IUPAC Name

4-[(1S,2R,5S,7S,10R,11S,14R,15R,17R)-5,7,11,17-tetrahydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl]-2,5-dihydrofuran-2-one

Traditional Name

4-[(1S,2R,5S,7S,10R,11S,14R,15R,17R)-5,7,11,17-tetrahydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl]-5H-furan-2-one

CAS Registry Number

Not Available

SMILES

C[C@]12C[C@@H](O)[C@H]3[C@@H](CC[C@]4(O)C[C@@H](O)CC[C@]34C)[C@@]1(O)CC[C@@H]2C1=CC(=O)OC1

InChI Identifier

InChI=1S/C23H34O6/c1-20-6-3-14(24)10-22(20,27)7-4-16-19(20)17(25)11-21(2)15(5-8-23(16,21)28)13-9-18(26)29-12-13/h9,14-17,19,24-25,27-28H,3-8,10-12H2,1-2H3/t14-,15+,16+,17+,19+,20+,21+,22-,23-/m0/s1

InChI Key

HHMGMLUGGZMHCB-YOZMPFPMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Chrysolina herbacea	LOTUS Database	35616633
Erysimum diffusum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cardenolides and derivatives. These are steroid lactones containing a furan-2-one moiety linked to the C17 atom of a cyclopenta[a]phenanthrene derivative.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid lactones

Direct Parent

Cardenolides and derivatives

Alternative Parents

Substituents

Cardanolide-skeleton
3-hydroxysteroid
14-hydroxysteroid
5-hydroxysteroid
Hydroxysteroid
11-alpha-hydroxysteroid
11-hydroxysteroid
3-beta-hydroxysteroid
2-furanone
Tertiary alcohol
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Dihydrofuran
Cyclic alcohol
Secondary alcohol
Lactone
Carboxylic acid ester
Carboxylic acid derivative
Oxacycle
Polyol
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Organic oxide
Organic oxygen compound
Alcohol
Organooxygen compound
Carbonyl group
Hydrocarbon derivative
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

3beta-hydroxy steroid (CHEBI:38243 )
14beta-hydroxy steroid (CHEBI:38243 )
11alpha-hydroxy steroid (CHEBI:38243 )
5beta-hydroxy steroid (CHEBI:38243 )
Cardanolides and derivatives (LMST01120006 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.53	ChemAxon
pKa (Strongest Acidic)	7.18	ChemAxon
pKa (Strongest Basic)	-2.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	4	ChemAxon
Polar Surface Area	107.22 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	106.72 m³·mol⁻¹	ChemAxon
Polarizability	43.69 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

21865349

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

12308767

PDB ID

Not Available

ChEBI ID

38243

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for bipindogenin (NP0254636)

MOL for NP0254636 (bipindogenin)

3D MOL for NP0254636 (bipindogenin)

3D SDF for NP0254636 (bipindogenin)

3D-SDF for NP0254636 (bipindogenin)

PDB for NP0254636 (bipindogenin)

3D PDB for NP0254636 (bipindogenin)

SMILES for NP0254636 (bipindogenin)

INCHI for NP0254636 (bipindogenin)

Structure for NP0254636 (bipindogenin)

3D Structure for NP0254636 (bipindogenin)