NP-MRD: Showing NP-Card for (e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid (NP0254565)

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Record Information

Version

2.0

Created at

2022-09-07 18:46:21 UTC

Updated at

2022-09-07 18:46:21 UTC

NP-MRD ID

NP0254565

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid

Description

Lobatamide C belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members. (e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid was first documented in 2003 (PMID: 12823009). Based on a literature review very few articles have been published on Lobatamide C (PMID: 19758758).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072220462D          

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M  END

     RDKit          3D

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M  END


  Mrv1652309072220462D          

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 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 24 26  2  0  0  0  0
 26 27  1  4  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 32 34  2  0  0  0  0
 28 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 13 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0254565

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CO\N=C/C=C/C(/O)=N\C=C\CC1CC(=O)OC(C)\C=C\C(O)C(C)=CCC2=CC=CC(O)=C2C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C27H32N2O8/c1-18-11-13-20-7-4-9-23(31)26(20)27(34)37-21(17-25(33)36-19(2)12-14-22(18)30)8-5-15-28-24(32)10-6-16-29-35-3/h4-7,9-12,14-16,19,21-22,30-31H,8,13,17H2,1-3H3,(H,28,32)/b10-6+,14-12+,15-5+,18-11?,29-16-

> <INCHI_KEY>
JYHIHHYYXXKTTJ-HPPATNPVSA-N

> <FORMULA>
C27H32N2O8

> <MOLECULAR_WEIGHT>
512.559

> <EXACT_MASS>
512.215865998

> <JCHEM_ACCEPTOR_COUNT>
8

> <JCHEM_ATOM_COUNT>
69

> <JCHEM_AVERAGE_POLARIZABILITY>
53.17862536652507

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(E,2E,4Z)-N-[(1E)-3-(10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-3,4,5,7,10,13-hexahydro-1H-2,6-benzodioxacyclopentadecin-3-yl)prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid

> <JCHEM_LOGP>
1.5195646541583956

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.635705911447126

> <JCHEM_PKA_STRONGEST_ACIDIC>
-0.7228480875464145

> <JCHEM_PKA_STRONGEST_BASIC>
11.203692227693567

> <JCHEM_POLAR_SURFACE_AREA>
147.24

> <JCHEM_REFRACTIVITY>
140.60390000000004

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(E,2E,4Z)-N-[(1E)-3-(10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3H-2,6-benzodioxacyclopentadecin-3-yl)prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      10.087  12.879   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      10.025  11.341   0.000  0.00  0.00           O+0
HETATM    3  N   UNK     0      11.327  10.518   0.000  0.00  0.00           N+0
HETATM    4  C   UNK     0      11.266   8.979   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.903   8.263   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.842   6.724   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.478   6.008   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       7.176   6.830   0.000  0.00  0.00           O+0
HETATM    9  N   UNK     0       8.417   4.469   0.000  0.00  0.00           N+0
HETATM   10  C   UNK     0       9.719   3.647   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.658   2.108   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      10.960   1.286   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      10.898  -0.253   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.342  -1.122   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      13.866  -0.895   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      14.577   0.471   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      14.552  -2.274   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      13.453  -3.352   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      12.067  -2.683   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      13.277  -5.028   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      11.898  -5.715   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      11.804  -7.252   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0      13.088  -8.103   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0      10.425  -7.939   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      10.331  -9.476   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.141  -7.088   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.236  -5.551   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       7.952  -4.701   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       6.574  -5.387   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       5.290  -4.537   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       5.385  -2.999   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       6.763  -2.313   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       6.858  -0.776   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       8.047  -3.163   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       9.425  -2.477   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0      10.709  -3.327   0.000  0.00  0.00           O+0
HETATM   37  O   UNK     0       9.520  -0.940   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   37                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   34                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   28   35                                                  
CONECT   35   34   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   13                                                       
MASTER        0    0    0    0    0    0    0    0   37    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₇H₃₂N₂O₈

Average Mass

512.5590 Da

Monoisotopic Mass

512.21587 Da

IUPAC Name

(E,2E,4Z)-N-[(1E)-3-(10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-3,4,5,7,10,13-hexahydro-1H-2,6-benzodioxacyclopentadecin-3-yl)prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid

Traditional Name

(E,2E,4Z)-N-[(1E)-3-(10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3H-2,6-benzodioxacyclopentadecin-3-yl)prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid

CAS Registry Number

Not Available

SMILES

CO\N=C/C=C/C(/O)=N\C=C\CC1CC(=O)OC(C)\C=C\C(O)C(C)=CCC2=CC=CC(O)=C2C(=O)O1

InChI Identifier

InChI=1S/C27H32N2O8/c1-18-11-13-20-7-4-9-23(31)26(20)27(34)37-21(17-25(33)36-19(2)12-14-22(18)30)8-5-15-28-24(32)10-6-16-29-35-3/h4-7,9-12,14-16,19,21-22,30-31H,8,13,17H2,1-3H3,(H,28,32)/b10-6+,14-12+,15-5+,18-11?,29-16-

InChI Key

JYHIHHYYXXKTTJ-HPPATNPVSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as macrolides and analogues. These are organic compounds containing a lactone ring of at least twelve members.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Macrolides and analogues

Sub Class

Not Available

Direct Parent

Macrolides and analogues

Alternative Parents

Substituents

Macrolide
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Phenol
N-acyl-amine
Benzenoid
Vinylogous acid
Carboxamide group
Carboxylic acid ester
Lactone
Oxime ether
Secondary alcohol
Secondary carboxylic acid amide
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Oxacycle
Organoheterocyclic compound
Alcohol
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organic nitrogen compound
Carbonyl group
Organic oxide
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.52	ChemAxon
pKa (Strongest Acidic)	-0.72	ChemAxon
pKa (Strongest Basic)	11.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	8	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	147.24 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	140.6 m³·mol⁻¹	ChemAxon
Polarizability	53.18 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6519828

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Perez-Sayans M, Somoza-Martin JM, Barros-Angueira F, Rey JM, Garcia-Garcia A: V-ATPase inhibitors and implication in cancer treatment. Cancer Treat Rev. 2009 Dec;35(8):707-13. doi: 10.1016/j.ctrv.2009.08.003. Epub 2009 Sep 15. [PubMed:19758758 ]
Shen R, Lin CT, Bowman EJ, Bowman BJ, Porco JA Jr: Lobatamide C: total synthesis, stereochemical assignment, preparation of simplified analogues, and V-ATPase inhibition studies. J Am Chem Soc. 2003 Jul 2;125(26):7889-901. doi: 10.1021/ja0352350. [PubMed:12823009 ]
LOTUS database [Link]

Showing NP-Card for (e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid (NP0254565)

MOL for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

3D MOL for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

3D SDF for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

3D-SDF for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

PDB for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

3D PDB for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

SMILES for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

INCHI for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

Structure for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)

3D Structure for NP0254565 ((e,2e,4z)-n-[(1e)-3-[(8e)-10,17-dihydroxy-7,11-dimethyl-1,5-dioxo-4,7,10,13-tetrahydro-3h-2,6-benzodioxacyclopentadecin-3-yl]prop-1-en-1-yl]-4-(methoxyimino)but-2-enimidic acid)