NP-MRD: Showing NP-Card for methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate (NP0253752)

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Record Information

Version

2.0

Created at

2022-09-07 17:43:04 UTC

Updated at

2022-09-07 17:43:04 UTC

NP-MRD ID

NP0253752

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate

Description

Methyl 2-{3-[(3R)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]Undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate belongs to the class of organic compounds known as flavanones. Flavanones are compounds containing a flavan-3-one moiety, with a structure characterized by a 2-phenyl-3,4-dihydro-2H-1-benzopyran bearing a ketone at the carbon C3. methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate is found in Allium cepa. Based on a literature review very few articles have been published on methyl 2-{3-[(3R)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]Undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072219432D          

 37 41  0  0  1  0            999 V2000
    3.2704    5.8263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    5.1118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704    4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    4.3974    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329    3.6829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704    2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    3.6829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2704   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0733    2.5089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  6  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 17 24  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  2  0  0  0  0
 26 33  1  0  0  0  0
 33 34  1  0  0  0  0
 14 34  1  0  0  0  0
 34 35  2  0  0  0  0
 13 36  2  0  0  0  0
  7 36  1  0  0  0  0
 36 37  1  0  0  0  0
M  END

     RDKit          3D

 53 57  0  0  0  0  0  0  0  0999 V2000
    7.0051   -3.2983   -0.9252 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6360   -2.9674   -1.0288 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1303   -1.7511   -0.4897 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0628   -1.0871    0.0491 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.7457   -1.4195   -0.5873 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1063   -2.2116   -1.4131 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9930   -0.3941    0.0666 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5692    0.4533    1.0112 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8162    0.4330    1.4160 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7242    1.4483    1.5904 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4243    1.5793    1.2494 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7046    2.6090    1.9123 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8402    0.7580    0.3210 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5826    0.9446   -0.0167 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.3117    0.7389    1.2809 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6899    0.1574    0.0219 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.9005   -1.2924    0.0166 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2762   -2.1767    0.8777 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5142   -3.5366    0.8388 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4079   -4.0599   -0.0855 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6475   -5.4302   -0.1178 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0446   -3.2236   -0.9513 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9533   -3.7830   -1.8842 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7856   -1.8767   -0.8900 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8823    0.8169   -0.5311 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2408    2.1128   -0.2654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5062    2.5756   -0.0248 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6765    3.9228    0.2284 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9771    4.3295    0.4630 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5945    4.7675    0.2326 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3099    4.3434   -0.0014 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2108    5.1646    0.0012 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1520    3.0013   -0.2501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8866    2.3321   -0.5127 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0471    2.9949   -1.1845 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.6313   -0.2285   -0.2662 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9804   -0.9975   -1.1727 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.3793   -2.7840    0.0068 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5712   -2.9526   -1.8249 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0911   -4.4215   -0.7944 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6035    0.5448    1.7982 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2049    2.0870    2.3104 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2284    2.7573    1.7507 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5668   -1.8211    1.6201 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0267   -4.2165    1.4945 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2330   -6.1023    0.4900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4068   -3.1173   -2.4962 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3025   -1.2200   -1.5895 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3412    1.8574   -0.0468 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6296    4.6385   -0.2164 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7596    5.8259    0.4311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2888    4.9017   -0.1572 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1611   -1.7264   -1.7554 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  2  0
  8  9  1  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 11 13  1  0
 13 36  2  0
 36 37  1  0
 14 13  1  1
 14 15  1  0
 15 16  1  0
 16 25  1  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  1  0
 28 30  2  0
 30 31  1  0
 31 32  1  0
 31 33  2  0
 33 34  1  0
 34 35  2  0
 16 17  1  1
 17 18  2  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 20 22  1  0
 22 23  1  0
 22 24  2  0
 36  7  1  0
 16 14  1  0
 33 26  1  0
 24 17  1  0
 34 14  1  0
  1 38  1  0
  1 39  1  0
  1 40  1  0
  9 41  1  0
 10 42  1  0
 12 43  1  0
 37 53  1  0
 27 49  1  0
 29 50  1  0
 30 51  1  0
 32 52  1  0
 18 44  1  0
 19 45  1  0
 21 46  1  0
 23 47  1  0
 24 48  1  0
M  END


  Mrv1652309072219432D          

 37 41  0  0  1  0            999 V2000
    3.2704    5.8263    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    5.1118    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704    4.3974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    4.3974    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    3.6829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0329    3.6829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704    2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    2.9684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    3.6829    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704    1.5395    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.2704   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954   -0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0954   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5079   -2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2704   -2.1434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.8579    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0733    2.5089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  1  6  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
 20 21  1  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  2  0  0  0  0
 17 24  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 28 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 33  2  0  0  0  0
 26 33  1  0  0  0  0
 33 34  1  0  0  0  0
 14 34  1  0  0  0  0
 34 35  2  0  0  0  0
 13 36  2  0  0  0  0
  7 36  1  0  0  0  0
 36 37  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0253752

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C(=O)C1=C(O)C=C(O)C(=C1O)C12O[C@]1(OC1=CC(O)=CC(O)=C1C2=O)C1=CC=C(O)C(O)=C1

> <INCHI_IDENTIFIER>
InChI=1S/C24H16O13/c1-35-22(34)20(32)17-13(29)7-14(30)18(19(17)31)23-21(33)16-12(28)5-9(25)6-15(16)36-24(23,37-23)8-2-3-10(26)11(27)4-8/h2-7,25-31H,1H3/t23?,24-/m1/s1

> <INCHI_KEY>
KMXKPPNRVRZIAJ-XMMISQBUSA-N

> <FORMULA>
C24H16O13

> <MOLECULAR_WEIGHT>
512.379

> <EXACT_MASS>
512.059090575

> <JCHEM_ACCEPTOR_COUNT>
12

> <JCHEM_ATOM_COUNT>
53

> <JCHEM_AVERAGE_POLARIZABILITY>
46.60770641558435

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
7

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
methyl 2-{3-[(3R)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0^{3,5}]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate

> <JCHEM_LOGP>
4.874607935333334

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
7.199198283660334

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.0410641413059984

> <JCHEM_PKA_STRONGEST_BASIC>
-4.562930630198146

> <JCHEM_POLAR_SURFACE_AREA>
223.80999999999997

> <JCHEM_REFRACTIVITY>
120.05289999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
methyl {3-[(3R)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0^{3,5}]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}(oxo)acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       6.105  10.876   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       5.335   9.542   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       6.105   8.208   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       7.645   8.208   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       5.335   6.875   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       3.795   6.875   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       6.105   5.541   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       7.645   5.541   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       8.415   6.875   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       8.415   4.207   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       7.645   2.874   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       8.415   1.540   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       6.105   2.874   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       6.668   0.770   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.105  -1.334   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.645  -1.334   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       8.415  -2.667   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       7.645  -4.001   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.415  -5.335   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.105  -4.001   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       5.335  -5.335   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       5.335  -2.667   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -0.000   0.000   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       4.001   3.850   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       5.335   4.207   0.000  0.00  0.00           C+0
HETATM   37  O   UNK     0       3.870   4.683   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   36                                                  
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   36                                                  
CONECT   14   13   15   16   34                                             
CONECT   15   14   16                                                       
CONECT   16   15   14   17   25                                             
CONECT   17   16   18   24                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   17                                                       
CONECT   25   16   26                                                       
CONECT   26   25   27   33                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31                                                       
CONECT   31   30   32   33                                                  
CONECT   32   31                                                            
CONECT   33   31   26   34                                                  
CONECT   34   33   14   35                                                  
CONECT   35   34                                                            
CONECT   36   13    7   37                                                  
CONECT   37   36                                                            
MASTER        0    0    0    0    0    0    0    0   37    0   82    0
END

View in JSmol

Synonyms

Value	Source
Methyl 2-{3-[(3R)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0,]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetic acid	Generator

Chemical Formula

C₂₄H₁₆O₁₃

Average Mass

512.3790 Da

Monoisotopic Mass

512.05909 Da

IUPAC Name

methyl 2-{3-[(3R)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0^{3,5}]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate

Traditional Name

methyl {3-[(3R)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0^{3,5}]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}(oxo)acetate

CAS Registry Number

Not Available

SMILES

COC(=O)C(=O)C1=C(O)C=C(O)C(=C1O)C12O[C@]1(OC1=CC(O)=CC(O)=C1C2=O)C1=CC=C(O)C(O)=C1

InChI Identifier

InChI=1S/C24H16O13/c1-35-22(34)20(32)17-13(29)7-14(30)18(19(17)31)23-21(33)16-12(28)5-9(25)6-15(16)36-24(23,37-23)8-2-3-10(26)11(27)4-8/h2-7,25-31H,1H3/t23?,24-/m1/s1

InChI Key

KMXKPPNRVRZIAJ-XMMISQBUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Allium cepa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as flavanones. Flavanones are compounds containing a flavan-3-one moiety, with a structure characterized by a 2-phenyl-3,4-dihydro-2H-1-benzopyran bearing a ketone at the carbon C3.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Flavonoids

Sub Class

Flavans

Direct Parent

Flavanones

Alternative Parents

Substituents

Isoflavone
Isoflavanone
Isoflavanol
Hydroxyflavonoid
Flavanone
7-hydroxyflavonoid
5-hydroxyflavonoid
4'-hydroxyflavonoid
3'-hydroxyflavonoid
Isoflavonoid
Isoflavan
Stilbene
Chromone
Acylphloroglucinol derivative
Benzopyran
Chromane
1-benzopyran
Benzenetriol
Phloroglucinol derivative
Benzoyl
Catechol
Aryl alkyl ketone
Aryl ketone
Phenol
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Keto acid
Alpha-keto acid
Monocyclic benzene moiety
Benzenoid
Methyl ester
Vinylogous acid
Carboxylic acid ester
Ketone
Carboxylic acid derivative
Polyol
Organoheterocyclic compound
Oxacycle
Monocarboxylic acid or derivatives
Oxirane
Carbonyl group
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Organooxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	4.87	ChemAxon
pKa (Strongest Acidic)	6.04	ChemAxon
pKa (Strongest Basic)	-4.6	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	12	ChemAxon
Hydrogen Donor Count	7	ChemAxon
Polar Surface Area	223.81 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	120.05 m³·mol⁻¹	ChemAxon
Polarizability	46.61 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163185597

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate (NP0253752)

MOL for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

3D MOL for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

3D SDF for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

3D-SDF for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

PDB for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

3D PDB for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

SMILES for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

INCHI for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

Structure for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)

3D Structure for NP0253752 (methyl 2-{3-[(3r)-3-(3,4-dihydroxyphenyl)-8,10-dihydroxy-6-oxo-2,4-dioxatricyclo[5.4.0.0³,⁵]undeca-1(11),7,9-trien-5-yl]-2,4,6-trihydroxyphenyl}-2-oxoacetate)