NP-MRD: Showing NP-Card for 3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol (NP0253573)

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Record Information

Version

2.0

Created at

2022-09-07 17:28:49 UTC

Updated at

2022-09-07 17:28:49 UTC

NP-MRD ID

NP0253573

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol

Description

3-(6,7-Dimethoxy-2H-1,3-benzodioxol-5-yl)prop-2-en-1-ol belongs to the class of organic compounds known as cinnamyl alcohols. These are aromatic alcohols containing a 3-phenylprop-2-en-1-ol moiety. 3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol is found in Piper hispidum. 3-(6,7-Dimethoxy-2H-1,3-benzodioxol-5-yl)prop-2-en-1-ol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 31 32  0  0  0  0  0  0  0  0999 V2000
   -0.6190   -2.4521    1.5646 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6845   -1.8011    0.3324 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5618   -0.4091    0.1858 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6987    0.1342   -0.0117 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8800   -0.7011   -0.0695 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0912   -0.2543   -0.2516 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2696   -1.1602   -0.3023 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8959   -2.4906   -0.1337 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7666    1.5011   -0.1496 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3920    2.2924   -0.0908 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6133    1.6920    0.1076 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7238    0.3211    0.2508 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9356   -0.3053    0.4505 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7741   -0.7790   -0.5709 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5499    2.6961    0.1204 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9398    3.8600   -0.4392 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5390    3.6666   -0.2045 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0027   -3.4982    1.3980 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4088   -2.4335    1.9294 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2541   -1.9608    2.3509 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7479   -1.7848    0.0478 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2688    0.7955   -0.3711 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0232   -0.8942    0.4724 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8054   -1.0186   -1.2855 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3437   -2.8708    0.6504 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6982    1.9976   -0.3045 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0710    0.0231   -1.2798 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2607   -1.5717   -1.1555 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6531   -1.2556   -0.0835 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2660    4.7728    0.0612 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0577    3.8884   -1.5397 H   0  0  0  0  0  0  0  0  0  0  0  0
 14 13  1  0
 13 12  1  0
 12  3  2  0
  3  2  1  0
  2  1  1  0
  3  4  1  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  4  9  2  0
  9 10  1  0
 10 11  2  0
 11 15  1  0
 15 16  1  0
 16 17  1  0
 11 12  1  0
 17 10  1  0
 14 27  1  0
 14 28  1  0
 14 29  1  0
  1 18  1  0
  1 19  1  0
  1 20  1  0
  5 21  1  0
  6 22  1  0
  7 23  1  0
  7 24  1  0
  8 25  1  0
  9 26  1  0
 16 30  1  0
 16 31  1  0
M  END


  Mrv1652308211904412D          

 17 18  0  0  0  0            999 V2000
    2.7845    3.1729    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411    3.5854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845   -0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4990   -0.5396    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6284    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2135   -0.1271    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7845    2.3479    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    3.1729    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  4  3  2  0  0  0  0
  5  3  1  0  0  0  0
  4  8  1  4  0  0  0
  8  6  2  0  0  0  0
  9  6  1  0  0  0  0
 10  8  1  0  0  0  0
 11  9  2  0  0  0  0
 12 10  2  0  0  0  0
 12 11  1  0  0  0  0
 13  5  1  0  0  0  0
 14  1  1  0  0  0  0
 14 10  1  0  0  0  0
 15  2  1  0  0  0  0
 15 12  1  0  0  0  0
 16  7  1  0  0  0  0
 16  9  1  0  0  0  0
 17  7  1  0  0  0  0
 17 11  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0253573

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=C(OC)C(C=CCO)=CC2=C1OCO2

> <INCHI_IDENTIFIER>
InChI=1S/C12H14O5/c1-14-10-8(4-3-5-13)6-9-11(12(10)15-2)17-7-16-9/h3-4,6,13H,5,7H2,1-2H3

> <INCHI_KEY>
SNICMNWLOMALIJ-UHFFFAOYSA-N

> <FORMULA>
C12H14O5

> <MOLECULAR_WEIGHT>
238.239

> <EXACT_MASS>
238.084123551

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
31

> <JCHEM_AVERAGE_POLARIZABILITY>
24.562467651963818

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-(6,7-dimethoxy-2H-1,3-benzodioxol-5-yl)prop-2-en-1-ol

> <ALOGPS_LOGP>
1.63

> <JCHEM_LOGP>
1.123702658333333

> <ALOGPS_LOGS>
-2.35

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
15.619482290504429

> <JCHEM_PKA_STRONGEST_BASIC>
-2.5278384461333623

> <JCHEM_POLAR_SURFACE_AREA>
57.150000000000006

> <JCHEM_REFRACTIVITY>
61.88580000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.07e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
3-(6,7-dimethoxy-2H-1,3-benzodioxol-5-yl)prop-2-en-1-ol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 21-AUG-19   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   21-AUG-19         0                                  
HETATM    1  C   UNK     0       5.198   5.923   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       1.197   6.693   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.198  -0.237   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       5.198   1.303   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.531  -1.007   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.530   1.303   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.173   2.843   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       3.864   2.073   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.197   2.073   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.864   3.613   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.197   3.613   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.530   4.383   0.000  0.00  0.00           C+0
HETATM   13  O   UNK     0       7.865  -0.237   0.000  0.00  0.00           O+0
HETATM   14  O   UNK     0       5.198   4.383   0.000  0.00  0.00           O+0
HETATM   15  O   UNK     0       2.530   5.923   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      -0.268   1.597   0.000  0.00  0.00           O+0
HETATM   17  O   UNK     0      -0.268   4.089   0.000  0.00  0.00           O+0
CONECT    1   14                                                            
CONECT    2   15                                                            
CONECT    3    4    5                                                       
CONECT    4    3    8                                                       
CONECT    5    3   13                                                       
CONECT    6    8    9                                                       
CONECT    7   16   17                                                       
CONECT    8    4    6   10                                                  
CONECT    9    6   11   16                                                  
CONECT   10    8   12   14                                                  
CONECT   11    9   12   17                                                  
CONECT   12   10   11   15                                                  
CONECT   13    5                                                            
CONECT   14    1   10                                                       
CONECT   15    2   12                                                       
CONECT   16    7    9                                                       
CONECT   17    7   11                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   36    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₂H₁₄O₅

Average Mass

238.2390 Da

Monoisotopic Mass

238.08412 Da

IUPAC Name

3-(6,7-dimethoxy-2H-1,3-benzodioxol-5-yl)prop-2-en-1-ol

Traditional Name

3-(6,7-dimethoxy-2H-1,3-benzodioxol-5-yl)prop-2-en-1-ol

CAS Registry Number

Not Available

SMILES

COC1=C(OC)C(C=CCO)=CC2=C1OCO2

InChI Identifier

InChI=1S/C12H14O5/c1-14-10-8(4-3-5-13)6-9-11(12(10)15-2)17-7-16-9/h3-4,6,13H,5,7H2,1-2H3

InChI Key

SNICMNWLOMALIJ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Piper hispidum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cinnamyl alcohols. These are aromatic alcohols containing a 3-phenylprop-2-en-1-ol moiety.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamyl alcohols

Sub Class

Not Available

Direct Parent

Cinnamyl alcohols

Alternative Parents

Substituents

Cinnamyl alcohol
Benzodioxole
Styrene
Anisole
Alkyl aryl ether
Benzenoid
Acetal
Oxacycle
Organoheterocyclic compound
Ether
Organic oxygen compound
Organooxygen compound
Primary alcohol
Hydrocarbon derivative
Alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.63	ALOGPS
logP	1.12	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	15.62	ChemAxon
pKa (Strongest Basic)	-2.5	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	57.15 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	61.89 m³·mol⁻¹	ChemAxon
Polarizability	24.56 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

HMDB0128659

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

FDB087510

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

286711

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol (NP0253573)

MOL for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

3D MOL for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

3D SDF for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

3D-SDF for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

PDB for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

3D PDB for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

SMILES for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

INCHI for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

Structure for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)

3D Structure for NP0253573 (3-(6,7-dimethoxy-2h-1,3-benzodioxol-5-yl)prop-2-en-1-ol)