NP-MRD: Showing NP-Card for 20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one (NP0253343)

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Record Information

Version

2.0

Created at

2022-09-07 17:11:22 UTC

Updated at

2022-09-07 17:11:22 UTC

NP-MRD ID

NP0253343

Secondary Accession Numbers

None

Natural Product Identification

Common Name

20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one

Description

20-Benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]Docosa-4,12,21-trien-3-one belongs to the class of organic compounds known as cytochalasins. These are cytochalasans in which the hydrogenated isoindolone bears a benzyl group. Based on a literature review very few articles have been published on 20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]Docosa-4,12,21-trien-3-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072219112D          

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M  END

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  Mrv1652309072219112D          

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 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
  2 34  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0253343

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1C2C(CC3=CC=CC=C3)N=C(O)C22OC(=O)C=CCCCCC(C)CC=CC2C2OC12C

> <INCHI_IDENTIFIER>
InChI=1S/C29H37NO4/c1-19-12-7-4-5-10-17-24(31)33-29-22(16-11-13-19)26-28(3,34-26)20(2)25(29)23(30-27(29)32)18-21-14-8-6-9-15-21/h6,8-11,14-17,19-20,22-23,25-26H,4-5,7,12-13,18H2,1-3H3,(H,30,32)

> <INCHI_KEY>
RALXUFVWILFUQT-UHFFFAOYSA-N

> <FORMULA>
C29H37NO4

> <MOLECULAR_WEIGHT>
463.618

> <EXACT_MASS>
463.272258675

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
52.36715607664465

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0^{1,19}.0^{15,17}]docosa-4,12,21-trien-3-one

> <JCHEM_LOGP>
5.089324838440981

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
19.45186084323683

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.9829567524373628

> <JCHEM_PKA_STRONGEST_BASIC>
4.883798803189258

> <JCHEM_POLAR_SURFACE_AREA>
71.42000000000002

> <JCHEM_REFRACTIVITY>
133.6637

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0^{1,19}.0^{15,17}]docosa-4,12,21-trien-3-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       1.510   3.495   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.374   2.220   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       3.910   2.331   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.774   1.056   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.310   1.167   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       7.174  -0.108   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       8.710   0.003   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      10.246   0.114   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       9.574  -1.272   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      10.960  -1.944   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.902  -2.657   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       9.766  -3.932   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       7.366  -2.768   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.421  -3.984   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.849  -5.463   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.781  -6.574   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.209  -8.053   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       5.142  -9.163   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       3.647  -8.794   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       3.219  -7.314   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.286  -6.204   0.000  0.00  0.00           C+0
HETATM   22  N   UNK     0       4.973  -3.460   0.000  0.00  0.00           N+0
HETATM   23  C   UNK     0       4.982  -2.135   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       3.807  -0.976   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       6.502  -1.494   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       4.966  -1.604   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       4.294  -2.990   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       5.158  -4.265   0.000  0.00  0.00           O+0
HETATM   29  C   UNK     0       2.758  -3.101   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       1.894  -1.826   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       0.358  -1.937   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      -0.506  -0.662   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       0.166   0.724   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       1.702   0.834   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   34                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   25                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    9                                                       
CONECT    9    8    7   10   11                                             
CONECT   10    9                                                            
CONECT   11    9   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   25                                                  
CONECT   14   13   15   22                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   21                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   16                                                       
CONECT   22   14   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23    6   13   26                                             
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33    2                                                       
MASTER        0    0    0    0    0    0    0    0   34    0   76    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₉H₃₇NO₄

Average Mass

463.6180 Da

Monoisotopic Mass

463.27226 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

CC1C2C(CC3=CC=CC=C3)N=C(O)C22OC(=O)C=CCCCCC(C)CC=CC2C2OC12C

InChI Identifier

InChI=1S/C29H37NO4/c1-19-12-7-4-5-10-17-24(31)33-29-22(16-11-13-19)26-28(3,34-26)20(2)25(29)23(30-27(29)32)18-21-14-8-6-9-15-21/h6,8-11,14-17,19-20,22-23,25-26H,4-5,7,12-13,18H2,1-3H3,(H,30,32)

InChI Key

RALXUFVWILFUQT-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cytochalasins. These are cytochalasans in which the hydrogenated isoindolone bears a benzyl group.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Cytochalasans

Sub Class

Cytochalasins

Direct Parent

Cytochalasins

Alternative Parents

Substituents

Lactone cytochalasin skeleton
Cytochalasin
Macrolide lactam
Macrolide
Macrolactam
Isoindolone
Isoindoline
Isoindole or derivatives
Oxepane
2-pyrrolidone
Pyrrolidone
Monocyclic benzene moiety
Benzenoid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Pyrrolidine
Secondary carboxylic acid amide
Lactam
Lactone
Carboxylic acid ester
Carboxamide group
Carboxylic acid derivative
Dialkyl ether
Oxirane
Ether
Oxacycle
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Organic nitrogen compound
Carbonyl group
Organic oxygen compound
Organopnictogen compound
Organic oxide
Organooxygen compound
Organonitrogen compound
Hydrocarbon derivative
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

77909948

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one (NP0253343)

MOL for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

3D MOL for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

3D SDF for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

3D-SDF for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

PDB for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

3D PDB for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

SMILES for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

INCHI for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

Structure for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)

3D Structure for NP0253343 (20-benzyl-22-hydroxy-10,17,18-trimethyl-2,16-dioxa-21-azatetracyclo[12.8.0.0¹,¹⁹.0¹⁵,¹⁷]docosa-4,12,21-trien-3-one)