NP-MRD: Showing NP-Card for (1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid (NP0253175)

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Record Information

Version

2.0

Created at

2022-09-07 16:58:08 UTC

Updated at

2022-09-07 16:58:08 UTC

NP-MRD ID

NP0253175

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid

Description

Strongylophorine 7 belongs to the class of organic compounds known as 4-carboxy steroids. These are steroid compounds that carry a carboxyl group at the C4-atom of the steroid backbone. (1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid is found in Petrosia durissima. Based on a literature review a small amount of articles have been published on Strongylophorine 7.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072218582D          

 32 36  0  0  1  0            999 V2000
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  2 32  1  0  0  0  0
M  END

     RDKit          3D

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M  END


  Mrv1652309072218582D          

 32 36  0  0  1  0            999 V2000
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M  END
> <DATABASE_ID>
NP0253175

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]12CC[C@H]3[C@@](C)(CC[C@H]4[C@](C)(CCC[C@]34CO)C(O)=O)[C@@H]1C[C@]1(CC(=O)C=CC1=O)O2

> <INCHI_IDENTIFIER>
InChI=1S/C26H36O6/c1-22-11-7-18-23(2,21(30)31)9-4-10-25(18,15-27)17(22)8-12-24(3)19(22)14-26(32-24)13-16(28)5-6-20(26)29/h5-6,17-19,27H,4,7-15H2,1-3H3,(H,30,31)/t17-,18-,19-,22+,23-,24-,25-,26-/m0/s1

> <INCHI_KEY>
LFDVVUDPWRGWSD-UTRASCNGSA-N

> <FORMULA>
C26H36O6

> <MOLECULAR_WEIGHT>
444.568

> <EXACT_MASS>
444.251188879

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
68

> <JCHEM_AVERAGE_POLARIZABILITY>
48.38515156120354

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,1'S,2'S,6'S,7'R,10'R,11'S,15'S)-2'-(hydroxymethyl)-6',10',15'-trimethyl-2,5-dioxo-14'-oxaspiro[cyclohexane-1,13'-tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan]-3-ene-6'-carboxylic acid

> <JCHEM_LOGP>
3.7387394316666676

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
16.298383230487666

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.482283123236699

> <JCHEM_PKA_STRONGEST_BASIC>
-0.8446647576897272

> <JCHEM_POLAR_SURFACE_AREA>
100.89999999999999

> <JCHEM_REFRACTIVITY>
118.86509999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,1'S,2'S,6'S,7'R,10'R,11'S,15'S)-2'-(hydroxymethyl)-6',10',15'-trimethyl-2,5-dioxo-14'-oxaspiro[cyclohexane-1,13'-tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan]-3-ene-6'-carboxylic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       7.034  -5.249   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       7.562  -6.696   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.669  -5.626   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.150  -6.050   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      10.523  -7.544   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.004  -7.967   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.630  -6.473   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0      12.738  -5.403   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0      13.111  -6.897   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      14.591  -7.321   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      14.965  -8.815   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      13.858  -9.885   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      15.104 -10.790   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      13.183 -11.270   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      11.647 -11.378   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      14.045 -12.546   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      12.377  -9.461   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      11.270 -10.532   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       9.789 -10.108   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       9.416  -8.614   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.309  -9.684   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       7.935  -8.190   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.630  -9.007   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       5.449  -8.018   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       5.026  -9.498   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       3.532  -9.872   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       3.108 -11.352   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       2.461  -8.764   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       2.885  -7.284   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.379  -6.910   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       4.803  -5.430   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       6.026  -6.590   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   22   32                                             
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   20                                                  
CONECT    6    5    7    9   17                                             
CONECT    7    6    8                                                       
CONECT    8    7                                                            
CONECT    9    6   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   14   17                                             
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14                                                            
CONECT   17   12    6   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19    5   21   22                                             
CONECT   21   20                                                            
CONECT   22   20    2   23                                                  
CONECT   23   22   24                                                       
CONECT   24   23   25   30   32                                             
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   24   31                                                  
CONECT   31   30                                                            
CONECT   32   24    2                                                       
MASTER        0    0    0    0    0    0    0    0   32    0   72    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₃₆O₆

Average Mass

444.5680 Da

Monoisotopic Mass

444.25119 Da

IUPAC Name

(1R,1'S,2'S,6'S,7'R,10'R,11'S,15'S)-2'-(hydroxymethyl)-6',10',15'-trimethyl-2,5-dioxo-14'-oxaspiro[cyclohexane-1,13'-tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan]-3-ene-6'-carboxylic acid

Traditional Name

(1R,1'S,2'S,6'S,7'R,10'R,11'S,15'S)-2'-(hydroxymethyl)-6',10',15'-trimethyl-2,5-dioxo-14'-oxaspiro[cyclohexane-1,13'-tetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan]-3-ene-6'-carboxylic acid

CAS Registry Number

Not Available

SMILES

C[C@]12CC[C@H]3[C@@](C)(CC[C@H]4[C@](C)(CCC[C@]34CO)C(O)=O)[C@@H]1C[C@]1(CC(=O)C=CC1=O)O2

InChI Identifier

InChI=1S/C26H36O6/c1-22-11-7-18-23(2,21(30)31)9-4-10-25(18,15-27)17(22)8-12-24(3)19(22)14-26(32-24)13-16(28)5-6-20(26)29/h5-6,17-19,27H,4,7-15H2,1-3H3,(H,30,31)/t17-,18-,19-,22+,23-,24-,25-,26-/m0/s1

InChI Key

LFDVVUDPWRGWSD-UTRASCNGSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Petrosia durissima	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 4-carboxy steroids. These are steroid compounds that carry a carboxyl group at the C4-atom of the steroid backbone.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroid acids

Direct Parent

4-carboxy steroids

Alternative Parents

Substituents

19-hydroxysteroid
4-carboxy steroid
Hydroxysteroid
17-oxasteroid
Naphthofuran
Cyclohexenone
Oxolane
Ketone
Cyclic ketone
Carboxylic acid derivative
Carboxylic acid
Dialkyl ether
Ether
Monocarboxylic acid or derivatives
Oxacycle
Organoheterocyclic compound
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Carbonyl group
Organooxygen compound
Alcohol
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.74	ChemAxon
pKa (Strongest Acidic)	4.48	ChemAxon
pKa (Strongest Basic)	-0.84	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	100.9 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	118.87 m³·mol⁻¹	ChemAxon
Polarizability	48.39 Å³	ChemAxon
Number of Rings	5	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

68026685

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102267897

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid (NP0253175)

MOL for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

3D MOL for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

3D SDF for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

3D-SDF for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

PDB for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

3D PDB for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

SMILES for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

INCHI for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

Structure for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)

3D Structure for NP0253175 ((1r,3'as,3'br,5'ar,6's,9'as,9'bs,11'as)-9'a-(hydroxymethyl)-3'b,6',11'a-trimethyl-2,5-dioxo-3'a,4',5',5'a,7',8',9',9'b,10',11'-decahydro-3'h-spiro[cyclohexane-1,2'-phenanthro[2,1-b]fura]-3-ene-6'-carboxylic acid)