NP-MRD: Showing NP-Card for (2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one (NP0252087)

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Record Information

Version

2.0

Created at

2022-09-07 15:29:17 UTC

Updated at

2022-09-07 15:29:17 UTC

NP-MRD ID

NP0252087

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one

Description

N-Demethylmasonine belongs to the class of organic compounds known as homolycorine-type amaryllidaceae alkaloids. These are amaryllidaceae alkaloids compounds containing the homolycorine skeleton, made up of a [3,4-g]benzopyranone ring due to the oxidation of the hydroxyl group at the C6. They are biogenetically formed through a restructuring of lycorine-type alkaloids. (2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one is found in Narcissus pseudonarcissus. Based on a literature review very few articles have been published on N-Demethylmasonine.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 36 40  0  0  0  0  0  0  0  0999 V2000
    2.0203   -3.6355   -0.4216 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2425   -2.6967   -0.1046 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0690   -2.8781    0.2148 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9252   -1.9255    0.8131 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.3079   -2.2845    0.3185 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2665   -1.1701    0.5069 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8494    0.0401    0.1839 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5154    1.3952    0.2310 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6004    2.1052   -0.7846 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3128    1.6577   -0.2233 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4672    0.1962   -0.3359 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5238   -0.5140    0.6046 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.9068   -0.3276    0.2713 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4485    0.9405    0.2973 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7950    1.1894   -0.0112 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6220    0.1701   -0.3511 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1129   -1.1002   -0.3853 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7724   -1.3399   -0.0770 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8900    0.6981   -0.6041 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9363    2.0019   -0.0215 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5667    2.3548   -0.0567 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9178   -2.1942    1.9133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6567   -3.1695    0.9130 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2898   -2.5310   -0.7671 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2693   -1.2835    0.8859 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3449    1.8366    1.2237 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5494    1.3620   -0.1008 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6828    3.1970   -0.7057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7683    1.6929   -1.7826 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4469    1.8390    0.8209 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3566   -0.1311   -1.3822 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6580    0.0167    1.5963 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.9030    1.8338    0.5536 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7788   -1.9083   -0.6573 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1948    1.8744    1.0581 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5885    2.6881   -0.5583 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 19  1  0
 19 20  1  0
 20 21  1  0
 16 17  1  0
 17 18  2  0
 18  2  1  0
 12  4  1  0
 18 13  1  0
 11  7  1  0
 21 15  1  0
  4 22  1  1
  5 23  1  0
  5 24  1  0
  6 25  1  0
  8 26  1  0
  8 27  1  0
  9 28  1  0
  9 29  1  0
 10 30  1  0
 11 31  1  6
 12 32  1  1
 14 33  1  0
 20 35  1  0
 20 36  1  0
 17 34  1  0
M  END


  Mrv1652309072217292D          

 21 25  0  0  1  0            999 V2000
    2.3675   -4.5355    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0872   -3.7596    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2751   -3.6143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9948   -2.8384    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1827   -2.6932    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0976   -1.9173    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4342   -1.2866    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3213   -0.4693    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0637   -0.1095    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6354   -0.7043    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.2463   -1.4318    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5266   -2.2077    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3387   -2.3529    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8705   -1.7222    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6826   -1.8674    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9629   -2.6434    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4311   -3.2741    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6190   -3.1289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7875   -2.6166    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0168   -1.8241    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3340   -1.3611    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  4  3  1  6  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 11 10  1  1  0  0  0
  7 11  1  0  0  0  0
 11 12  1  0  0  0  0
  4 12  1  0  0  0  0
 12 13  1  6  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
  2 18  1  0  0  0  0
 16 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 15 21  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0252087

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O=C1O[C@@H]2CC=C3CCN[C@H]3[C@@H]2C2=CC3=C(OCO3)C=C12

> <INCHI_IDENTIFIER>
InChI=1S/C16H15NO4/c18-16-10-6-13-12(19-7-20-13)5-9(10)14-11(21-16)2-1-8-3-4-17-15(8)14/h1,5-6,11,14-15,17H,2-4,7H2/t11-,14-,15-/m1/s1

> <INCHI_KEY>
YKWKYZIJCKOEFI-KCPJHIHWSA-N

> <FORMULA>
C16H15NO4

> <MOLECULAR_WEIGHT>
285.299

> <EXACT_MASS>
285.100107967

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
36

> <JCHEM_AVERAGE_POLARIZABILITY>
29.31639524729016

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2S,3S,10R)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0^{2,10}.0^{3,7}.0^{15,19}]icosa-1(20),7,13,15(19)-tetraen-12-one

> <JCHEM_LOGP>
1.2691087513333337

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
5

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA_STRONGEST_BASIC>
9.87800568835021

> <JCHEM_POLAR_SURFACE_AREA>
56.790000000000006

> <JCHEM_REFRACTIVITY>
74.8888

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2S,3S,10R)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0^{2,10}.0^{3,7}.0^{15,19}]icosa-1(20),7,13,15(19)-tetraen-12-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  O   UNK     0       4.419  -8.466   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       3.896  -7.018   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       2.380  -6.747   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       1.857  -5.298   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.341  -5.027   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.182  -3.579   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.810  -2.402   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.600  -0.876   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.986  -0.204   0.000  0.00  0.00           C+0
HETATM   10  N   UNK     0       3.053  -1.315   0.000  0.00  0.00           N+0
HETATM   11  C   UNK     0       2.326  -2.673   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.850  -4.121   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.366  -4.392   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       5.358  -3.215   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       6.874  -3.486   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       7.398  -4.934   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       6.405  -6.112   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.889  -5.841   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.937  -4.884   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       9.365  -3.405   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       8.090  -2.541   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   18                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5   12                                                  
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8   11                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    7   12                                                  
CONECT   12   11    4   13                                                  
CONECT   13   12   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16   21                                                  
CONECT   16   15   17   19                                                  
CONECT   17   16   18                                                       
CONECT   18   17   13    2                                                  
CONECT   19   16   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   15                                                       
MASTER        0    0    0    0    0    0    0    0   21    0   50    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₆H₁₅NO₄

Average Mass

285.2990 Da

Monoisotopic Mass

285.10011 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

O=C1O[C@@H]2CC=C3CCN[C@H]3[C@@H]2C2=CC3=C(OCO3)C=C12

InChI Identifier

InChI=1S/C16H15NO4/c18-16-10-6-13-12(19-7-20-13)5-9(10)14-11(21-16)2-1-8-3-4-17-15(8)14/h1,5-6,11,14-15,17H,2-4,7H2/t11-,14-,15-/m1/s1

InChI Key

YKWKYZIJCKOEFI-KCPJHIHWSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Narcissus pseudonarcissus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as homolycorine-type amaryllidaceae alkaloids. These are amaryllidaceae alkaloids compounds containing the homolycorine skeleton, made up of a [3,4-g]benzopyranone ring due to the oxidation of the hydroxyl group at the C6. They are biogenetically formed through a restructuring of lycorine-type alkaloids.

Kingdom

Organic compounds

Super Class

Alkaloids and derivatives

Class

Amaryllidaceae alkaloids

Sub Class

Homolycorine-type amaryllidaceae alkaloids

Direct Parent

Homolycorine-type amaryllidaceae alkaloids

Alternative Parents

Substituents

Homolycorine skeleton
Benzopyran
Isochromane
2-benzopyran
Benzodioxole
Indole or derivatives
Dihydroindole
Aralkylamine
Benzenoid
Pyrrolidine
Amino acid or derivatives
Carboxylic acid ester
Lactone
Acetal
Carboxylic acid derivative
Secondary aliphatic amine
Oxacycle
Azacycle
Organoheterocyclic compound
Monocarboxylic acid or derivatives
Secondary amine
Hydrocarbon derivative
Organic nitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic oxide
Organonitrogen compound
Organooxygen compound
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101919100

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one (NP0252087)

MOL for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

3D MOL for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

3D SDF for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

3D-SDF for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

PDB for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

3D PDB for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

SMILES for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

INCHI for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

Structure for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)

3D Structure for NP0252087 ((2s,3s,10r)-11,16,18-trioxa-4-azapentacyclo[11.7.0.0²,¹⁰.0³,⁷.0¹⁵,¹⁹]icosa-1(20),7,13,15(19)-tetraen-12-one)