NP-MRD: Showing NP-Card for (1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate (NP0251768)

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Record Information

Version

2.0

Created at

2022-09-07 15:03:43 UTC

Updated at

2022-09-07 15:03:43 UTC

NP-MRD ID

NP0251768

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate

Description

Uvarirufol A belongs to the class of organic compounds known as benzoic acid esters. These are ester derivatives of benzoic acid. (1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate is found in Uvaria rufa. Based on a literature review very few articles have been published on Uvarirufol A.

Structure

MOL SDF PDB SMILES InChI


  Mrv1652309072217032D          

 28 30  0  0  1  0            999 V2000
    0.9744   -0.6228    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1620   -0.4795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3683   -1.1115    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1808   -0.9683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7111   -1.6002    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2414   -0.9683    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9966   -2.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9966   -2.8377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7111   -3.2502    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7111   -4.0752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -4.4877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1401   -4.0752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -5.3127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7111   -5.7252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7111   -6.5502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -6.9627    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1401   -6.5502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1401   -5.7252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -2.8377    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1401   -3.2502    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -2.0127    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1401   -1.6002    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1202    0.2957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9327    0.4390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2148    1.2142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6845    1.8462    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1279    1.7029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4101    0.9277    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
  9 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
  5 21  1  0  0  0  0
 21 22  1  1  0  0  0
  2 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
M  END


  Mrv1652309072217032D          

 28 30  0  0  1  0            999 V2000
    0.9744   -0.6228    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1620   -0.4795    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3683   -1.1115    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1808   -0.9683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7111   -1.6002    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.2414   -0.9683    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9966   -2.0127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9966   -2.8377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7111   -3.2502    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7111   -4.0752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -4.4877    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1401   -4.0752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -5.3127    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7111   -5.7252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7111   -6.5502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -6.9627    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1401   -6.5502    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1401   -5.7252    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -2.8377    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.1401   -3.2502    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4256   -2.0127    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1401   -1.6002    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1202    0.2957    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9327    0.4390    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2148    1.2142    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6845    1.8462    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1279    1.7029    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4101    0.9277    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  5  4  1  6  0  0  0
  5  6  1  1  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  6  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 13 18  1  0  0  0  0
  9 19  1  0  0  0  0
 19 20  1  6  0  0  0
 19 21  1  0  0  0  0
  5 21  1  0  0  0  0
 21 22  1  1  0  0  0
  2 23  1  0  0  0  0
 23 24  2  0  0  0  0
 24 25  1  0  0  0  0
 25 26  2  0  0  0  0
 26 27  1  0  0  0  0
 27 28  2  0  0  0  0
 23 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0251768

> <DATABASE_NAME>
NP-MRD

> <SMILES>
O[C@@H]1[C@@H](O)[C@](O)(COC(=O)C2=CC=CC=C2)C=C[C@@H]1OC(=O)C1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C21H20O7/c22-17-16(28-20(25)15-9-5-2-6-10-15)11-12-21(26,18(17)23)13-27-19(24)14-7-3-1-4-8-14/h1-12,16-18,22-23,26H,13H2/t16-,17-,18+,21+/m0/s1

> <INCHI_KEY>
PCFGXGDGOLIQTE-LXGFNABISA-N

> <FORMULA>
C21H20O7

> <MOLECULAR_WEIGHT>
384.384

> <EXACT_MASS>
384.120902984

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
39.05806001271779

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1S,4R,5R,6R)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate

> <JCHEM_LOGP>
2.230142304333333

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.257699605234595

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.3034585084607

> <JCHEM_PKA_STRONGEST_BASIC>
-3.658123572469356

> <JCHEM_POLAR_SURFACE_AREA>
113.29000000000002

> <JCHEM_REFRACTIVITY>
99.99450000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
7

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1S,4R,5R,6R)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  O   UNK     0       1.819  -1.163   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       0.302  -0.895   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0      -0.688  -2.075   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0      -2.204  -1.807   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -3.194  -2.987   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0      -4.184  -1.807   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0      -1.860  -3.757   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -1.860  -5.297   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -3.194  -6.067   0.000  0.00  0.00           C+0
HETATM   10  O   UNK     0      -3.194  -7.607   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0      -4.528  -8.377   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -5.861  -7.607   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -4.528  -9.917   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -3.194 -10.687   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -3.194 -12.227   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -4.528 -12.997   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      -5.861 -12.227   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.861 -10.687   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -4.528  -5.297   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      -5.861  -6.067   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      -4.528  -3.757   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      -5.861  -2.987   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      -0.224   0.552   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.741   0.819   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      -2.268   2.267   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.278   3.446   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       0.239   3.179   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       0.766   1.732   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   23                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6    7   21                                             
CONECT    6    5                                                            
CONECT    7    5    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   19                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   18                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   13                                                       
CONECT   19    9   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19    5   22                                                  
CONECT   22   21                                                            
CONECT   23    2   24   28                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   23                                                       
MASTER        0    0    0    0    0    0    0    0   28    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₀O₇

Average Mass

384.3840 Da

Monoisotopic Mass

384.12090 Da

IUPAC Name

(1S,4R,5R,6R)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate

Traditional Name

(1S,4R,5R,6R)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate

CAS Registry Number

Not Available

SMILES

O[C@@H]1[C@@H](O)[C@](O)(COC(=O)C2=CC=CC=C2)C=C[C@@H]1OC(=O)C1=CC=CC=C1

InChI Identifier

InChI=1S/C21H20O7/c22-17-16(28-20(25)15-9-5-2-6-10-15)11-12-21(26,18(17)23)13-27-19(24)14-7-3-1-4-8-14/h1-12,16-18,22-23,26H,13H2/t16-,17-,18+,21+/m0/s1

InChI Key

PCFGXGDGOLIQTE-LXGFNABISA-N

Experimental Spectra

Not Available

Predicted Spectra

Not Available

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Uvaria rufa	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as benzoic acid esters. These are ester derivatives of benzoic acid.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Benzene and substituted derivatives

Sub Class

Benzoic acids and derivatives

Direct Parent

Benzoic acid esters

Alternative Parents

Substituents

Benzoate ester
Benzoyl
Dicarboxylic acid or derivatives
Cyclitol or derivatives
Tertiary alcohol
Secondary alcohol
Carboxylic acid ester
Polyol
Carboxylic acid derivative
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Alcohol
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.23	ChemAxon
pKa (Strongest Acidic)	12.3	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	7	ChemAxon
Refractivity	99.99 m³·mol⁻¹	ChemAxon
Polarizability	39.06 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00057031

Chemspider ID

34947489

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101407914

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate (NP0251768)

MOL for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

3D MOL for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

3D SDF for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

3D-SDF for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

PDB for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

3D PDB for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

SMILES for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

INCHI for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

Structure for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)

3D Structure for NP0251768 ((1s,4r,5r,6r)-4-[(benzoyloxy)methyl]-4,5,6-trihydroxycyclohex-2-en-1-yl benzoate)