NP-MRD: Showing NP-Card for 3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid (NP0251749)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-07 15:02:16 UTC

Updated at

2022-09-07 15:02:16 UTC

NP-MRD ID

NP0251749

Secondary Accession Numbers

None

Natural Product Identification

Common Name

3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid

Description

Hydroberkeleyone B belongs to the class of organic compounds known as dicarboxylic acids and derivatives. These are organic compounds containing exactly two carboxylic acid groups. Based on a literature review very few articles have been published on Hydroberkeleyone B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072217022D          

 34 36  0  0  1  0            999 V2000
    2.2581    0.8137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4717    0.5641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8760   -0.3738    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6158   -1.1567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6989   -0.3147    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2389    0.3090    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9811   -0.0512    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5554   -0.6435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4975   -0.7196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8345   -1.4726    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3509   -2.1410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6880   -2.8940    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5303   -2.0563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6642    0.4115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4064    0.0513    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7666    0.7935    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0462   -0.6909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1486   -0.3089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6050    1.2344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8628    1.5946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1797    1.1319    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2285    1.9555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5561    1.6719    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8163    2.4548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6244    2.6209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2684    3.0716    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5287    3.8545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7332    1.6128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3636    2.3504    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1931    0.9891    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2695    1.6721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5864    0.7190    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2523    0.1662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4853   -0.2033    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  7 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 15 18  1  0  0  0  0
 14 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
  6 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
  2 23  1  0  0  0  0
 23 24  1  6  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 23 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  6  0  0  0
 30 33  1  0  0  0  0
  3 33  1  0  0  0  0
 33 34  2  0  0  0  0
M  END

     RDKit          3D

 70 72  0  0  0  0  0  0  0  0999 V2000
   -3.4748   -1.4110    1.1821 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4811   -0.5946    0.8726 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7388    0.2026    1.8828 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.1682   -0.1784    3.2846 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2402    0.0974    1.7903 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2179    0.1455    0.3435 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.6688    0.1944    0.1251 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.3606    0.4874    1.4392 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1113    1.3684   -0.7685 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7623    2.7132   -0.2511 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2709    3.6974   -1.2891 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8486    3.3581   -2.3276 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0579    5.0418   -1.0237 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1798   -0.9966   -0.5540 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4855   -1.6556   -0.2945 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7014   -2.0983    1.1195 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6311   -0.8688   -0.8804 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5124   -2.8744   -1.0394 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4167   -1.5494   -1.4825 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0784   -0.9889   -1.8289 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5673   -0.8499   -0.4689 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.5620   -2.2247    0.1409 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9928   -0.3653   -0.5280 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.8088   -1.0752   -1.5402 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3987   -0.3852   -2.4394 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9830   -2.4409   -1.5873 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7646   -3.1018   -2.5597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0491    1.1191   -0.7724 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5981    1.5729   -1.8168 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6478    2.0167    0.2486 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.3540    3.4639   -0.0278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0430    1.7897    0.1906 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1665    1.6294    1.6044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0897    2.3969    2.5309 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0242   -1.9862    0.4538 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7489   -1.5045    2.2205 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5111    0.2699    4.0528 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1311   -1.2694    3.4342 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2029    0.1946    3.4988 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1291    1.0570    2.2620 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1789   -0.7057    2.3831 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1958    1.1527   -0.0045 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9455    1.4509    1.7981 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2059   -0.2413    2.2230 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4411    0.7501    1.2404 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8444    1.2307   -1.8218 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2519    1.3532   -0.7873 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6916    2.9485   -0.1735 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3547    2.9925    0.6469 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1322    5.7661   -1.7175 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3566   -3.0243    1.1181 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7409   -2.4610    1.5235 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2533   -1.4033    1.7611 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.4673   -1.5757   -1.1903 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0581   -0.1034   -0.2427 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2620   -0.4931   -1.8782 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0558   -3.5860   -0.5587 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7207   -2.4428   -2.0474 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5493   -1.7693   -2.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0651   -0.1212   -2.4580 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5914   -2.6037    0.2371 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0477   -2.9928   -0.5090 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1152   -2.2790    1.1492 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2615   -4.0238   -2.9511 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9304   -2.3673   -3.3900 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7813   -3.3329   -2.1512 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5399    3.6122   -0.7568 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2946    3.9730   -0.3203 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0284    3.9388    0.9321 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3762    1.9609    1.1067 H   0  0  0  0  0  0  0  0  0  0  0  0
 27 26  1  0
 26 24  1  0
 24 25  2  0
 23 24  1  6
 23  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  1  1
  3  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  1
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 13  1  0
 11 12  2  0
  7 14  1  0
 14 19  2  0
 19 20  1  0
 20 21  1  0
 21 22  1  1
 14 15  1  0
 15 16  1  0
 15 17  1  0
 15 18  1  0
  3 33  1  0
 33 34  2  0
 33 30  1  0
 30 31  1  0
 30 32  1  1
 30 28  1  0
 28 29  2  0
 21 23  1  0
 28 23  1  0
 21  6  1  0
 27 64  1  0
 27 65  1  0
 27 66  1  0
  1 35  1  0
  1 36  1  0
  4 37  1  0
  4 38  1  0
  4 39  1  0
  5 40  1  0
  5 41  1  0
  6 42  1  6
  8 43  1  0
  8 44  1  0
  8 45  1  0
  9 46  1  0
  9 47  1  0
 10 48  1  0
 10 49  1  0
 13 50  1  0
 19 58  1  0
 20 59  1  0
 20 60  1  0
 22 61  1  0
 22 62  1  0
 22 63  1  0
 16 51  1  0
 16 52  1  0
 16 53  1  0
 17 54  1  0
 17 55  1  0
 17 56  1  0
 18 57  1  0
 31 67  1  0
 31 68  1  0
 31 69  1  0
 32 70  1  0
M  END


  Mrv1652309072217022D          

 34 36  0  0  1  0            999 V2000
    2.2581    0.8137    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4717    0.5641    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8760   -0.3738    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.6158   -1.1567    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6989   -0.3147    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2389    0.3090    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.9811   -0.0512    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5554   -0.6435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4975   -0.7196    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8345   -1.4726    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3509   -2.1410    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6880   -2.8940    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5303   -2.0563    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6642    0.4115    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4064    0.0513    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7666    0.7935    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0462   -0.6909    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1486   -0.3089    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.6050    1.2344    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8628    1.5946    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1797    1.1319    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2285    1.9555    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5561    1.6719    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.8163    2.4548    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6244    2.6209    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.2684    3.0716    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5287    3.8545    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7332    1.6128    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3636    2.3504    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1931    0.9891    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.2695    1.6721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5864    0.7190    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2523    0.1662    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4853   -0.2033    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  6  0  0  0
  3  5  1  0  0  0  0
  6  5  1  6  0  0  0
  6  7  1  0  0  0  0
  7  8  1  6  0  0  0
  7  9  1  1  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
  7 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 15 18  1  0  0  0  0
 14 19  2  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
  6 21  1  0  0  0  0
 21 22  1  6  0  0  0
 21 23  1  0  0  0  0
  2 23  1  0  0  0  0
 23 24  1  6  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 23 28  1  0  0  0  0
 28 29  2  0  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  6  0  0  0
 30 33  1  0  0  0  0
  3 33  1  0  0  0  0
 33 34  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0251749

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)[C@@]12C(=C)[C@@](C)(C[C@H]3[C@](C)(CCC(O)=O)C(=CC[C@]13C)C(C)(C)O)C(=O)[C@](C)(O)C2=O

> <INCHI_IDENTIFIER>
InChI=1S/C26H36O8/c1-14-23(5)13-16-22(4,11-10-17(27)28)15(21(2,3)32)9-12-24(16,6)26(14,20(31)34-8)19(30)25(7,33)18(23)29/h9,16,32-33H,1,10-13H2,2-8H3,(H,27,28)/t16-,22+,23+,24-,25-,26-/m0/s1

> <INCHI_KEY>
CQJRHJLQZVCBIG-GSISZECUSA-N

> <FORMULA>
C26H36O8

> <MOLECULAR_WEIGHT>
476.566

> <EXACT_MASS>
476.241018119

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
70

> <JCHEM_AVERAGE_POLARIZABILITY>
49.71311252678104

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
3-[(1R,2S,6S,7S,9R,11S)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0^{2,7}]tridec-4-en-6-yl]propanoic acid

> <JCHEM_LOGP>
2.7476008646666665

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
11.482263402527723

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.15925162519401

> <JCHEM_PKA_STRONGEST_BASIC>
-1.0221187455607366

> <JCHEM_POLAR_SURFACE_AREA>
138.2

> <JCHEM_REFRACTIVITY>
123.84779999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
3-[(1R,2S,6S,7S,9R,11S)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0^{2,7}]tridec-4-en-6-yl]propanoic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       4.215   1.519   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.747   1.053   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.635  -0.698   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.149  -2.159   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       3.171  -0.587   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.179   0.577   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.565  -0.096   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.637  -1.201   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.662  -1.343   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.291  -2.749   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       4.388  -3.996   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       5.018  -5.402   0.000  0.00  0.00           O+0
HETATM   13  O   UNK     0       2.857  -3.838   0.000  0.00  0.00           O+0
HETATM   14  C   UNK     0       6.840   0.768   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.225   0.096   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.898   1.481   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.553  -1.290   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       9.611  -0.577   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       6.729   2.304   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       5.344   2.977   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.069   2.113   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.160   3.650   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.905   3.121   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       3.390   4.582   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       4.899   4.892   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       2.368   5.734   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       2.854   7.195   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       1.369   3.011   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0       0.679   4.387   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       0.361   1.846   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      -0.503   3.121   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -1.095   1.342   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0       0.471   0.310   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -0.906  -0.380   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   23                                                  
CONECT    3    2    4    5   33                                             
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   21                                                  
CONECT    7    6    8    9   14                                             
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11                                                            
CONECT   14    7   15   19                                                  
CONECT   15   14   16   17   18                                             
CONECT   16   15                                                            
CONECT   17   15                                                            
CONECT   18   15                                                            
CONECT   19   14   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20    6   22   23                                             
CONECT   22   21                                                            
CONECT   23   21    2   24   28                                             
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26                                                            
CONECT   28   23   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32   33                                             
CONECT   31   30                                                            
CONECT   32   30                                                            
CONECT   33   30    3   34                                                  
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   72    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₆H₃₆O₈

Average Mass

476.5660 Da

Monoisotopic Mass

476.24102 Da

IUPAC Name

3-[(1R,2S,6S,7S,9R,11S)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0^{2,7}]tridec-4-en-6-yl]propanoic acid

Traditional Name

3-[(1R,2S,6S,7S,9R,11S)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0^{2,7}]tridec-4-en-6-yl]propanoic acid

CAS Registry Number

Not Available

SMILES

COC(=O)[C@@]12C(=C)[C@@](C)(C[C@H]3[C@](C)(CCC(O)=O)C(=CC[C@]13C)C(C)(C)O)C(=O)[C@](C)(O)C2=O

InChI Identifier

InChI=1S/C26H36O8/c1-14-23(5)13-16-22(4,11-10-17(27)28)15(21(2,3)32)9-12-24(16,6)26(14,20(31)34-8)19(30)25(7,33)18(23)29/h9,16,32-33H,1,10-13H2,2-8H3,(H,27,28)/t16-,22+,23+,24-,25-,26-/m0/s1

InChI Key

CQJRHJLQZVCBIG-GSISZECUSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as dicarboxylic acids and derivatives. These are organic compounds containing exactly two carboxylic acid groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Dicarboxylic acids and derivatives

Direct Parent

Dicarboxylic acids and derivatives

Alternative Parents

Substituents

Dicarboxylic acid or derivatives
Acyloin
Methyl ester
Tertiary alcohol
Cyclic alcohol
Ketone
Carboxylic acid ester
Carboxylic acid
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Carbonyl group
Alcohol
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.75	ChemAxon
pKa (Strongest Acidic)	4.16	ChemAxon
pKa (Strongest Basic)	-1	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	138.2 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	123.85 m³·mol⁻¹	ChemAxon
Polarizability	49.71 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

64808909

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

146684248

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid (NP0251749)

MOL for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

3D MOL for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

3D SDF for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

3D-SDF for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

PDB for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

3D PDB for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

SMILES for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

INCHI for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

Structure for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)

3D Structure for NP0251749 (3-[(1r,2s,6s,7s,9r,11s)-11-hydroxy-5-(2-hydroxypropan-2-yl)-1-(methoxycarbonyl)-2,6,9,11-tetramethyl-13-methylidene-10,12-dioxotricyclo[7.3.1.0²,⁷]tridec-4-en-6-yl]propanoic acid)