NP-MRD: Showing NP-Card for 5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile (NP0251475)

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Record Information

Version

2.0

Created at

2022-09-07 14:41:15 UTC

Updated at

2022-09-07 14:41:15 UTC

NP-MRD ID

NP0251475

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile

Description

5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile belongs to the class of organic compounds known as bipyridines and oligopyridines. These are organic compounds containing two pyridine rings linked to each other. 5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile is found in Streptomyces californicus. Based on a literature review very few articles have been published on 5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 30 31  0  0  0  0  0  0  0  0999 V2000
   -2.0126   -2.7154   -0.2559 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3255   -1.4302    0.1749 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3948   -0.4184    0.3617 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0619   -0.6709    0.1126 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9147    0.2938    0.2792 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3256    0.0374    0.0188 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7718   -1.1816   -0.4092 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1250   -1.3601   -0.6385 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0033   -0.3320   -0.4399 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5182    0.8801   -0.0090 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2082    1.0338    0.2072 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.4917    1.4997    0.7001 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7747    1.8219    0.9619 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1785    3.1294    1.4112 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4881    4.1753    1.7533 N   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7404    0.8423    0.7893 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4265    1.2306    1.1249 S   0  0  0  0  0  3  0  0  0  0  0  0
   -4.1361    1.7765   -0.4235 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1414   -0.2691    1.4387 O   0  0  0  0  0  1  0  0  0  0  0  0
   -1.6929   -2.7621   -1.3165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9075   -3.3719   -0.0739 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1934   -3.1481    0.3822 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1920   -1.6617   -0.2212 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1284   -2.0307   -0.5839 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5078   -2.3173   -0.9788 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0674   -0.4836   -0.6237 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1871    1.7089    0.1562 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4808    1.5552   -1.2810 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3749    2.8788   -0.3588 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1114    1.2892   -0.6231 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5 12  2  0
 12 13  1  0
 13 14  1  0
 14 15  3  0
 13 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  1  6
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  2  0
  9 10  1  0
 10 11  2  0
 16  3  1  0
 11  6  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  4 23  1  0
 18 28  1  0
 18 29  1  0
 18 30  1  0
  7 24  1  0
  8 25  1  0
  9 26  1  0
 10 27  1  0
M  CHG  2  17   1  19  -1
M  END


  Mrv1652309072216412D          

 19 20  0  0  1  0            999 V2000
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.1250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -3.7125    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -2.8875    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -2.8875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -3.3000    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 S   0  3  1  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
  6 11  1  0  0  0  0
  5 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  3  0  0  0  0
 13 16  2  0  0  0  0
  3 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  1  0  0  0
M  CHG  2  17   1  19  -1
M  END
> <DATABASE_ID>
NP0251475

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC(=NC(C#N)=C1[S@@+](C)[O-])C1=CC=CC=N1

> <INCHI_IDENTIFIER>
InChI=1S/C13H11N3O2S/c1-18-12-7-10(9-5-3-4-6-15-9)16-11(8-14)13(12)19(2)17/h3-7H,1-2H3/t19-/m1/s1

> <INCHI_KEY>
CEEFKOCHZZDNPV-LJQANCHMSA-N

> <FORMULA>
C13H11N3O2S

> <MOLECULAR_WEIGHT>
273.31

> <EXACT_MASS>
273.05719778

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
30

> <JCHEM_AVERAGE_POLARIZABILITY>
27.546112763211653

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile

> <JCHEM_LOGP>
0.7745168620000003

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.05860209816578

> <JCHEM_PKA_STRONGEST_BASIC>
2.8060888201957463

> <JCHEM_POLAR_SURFACE_AREA>
75.87

> <JCHEM_REFRACTIVITY>
72.31080000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       1.334  -0.770   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       2.667  -3.080   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667  -4.620   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       4.001  -5.390   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.335  -4.620   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.668  -5.390   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.335  -7.700   0.000  0.00  0.00           C+0
HETATM   11  N   UNK     0       4.001  -6.930   0.000  0.00  0.00           N+0
HETATM   12  N   UNK     0       1.334  -5.390   0.000  0.00  0.00           N+0
HETATM   13  C   UNK     0       0.000  -4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.334  -5.390   0.000  0.00  0.00           C+0
HETATM   15  N   UNK     0      -2.667  -6.160   0.000  0.00  0.00           N+0
HETATM   16  C   UNK     0       0.000  -3.080   0.000  0.00  0.00           C+0
HETATM   17  S   UNK     0      -1.334  -2.310   0.000  0.00  0.00           S+1
HETATM   18  C   UNK     0      -2.667  -3.080   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      -1.334  -0.770   0.000  0.00  0.00           O-1
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   16                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6   12                                                  
CONECT    6    5    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10    6                                                       
CONECT   12    5   13                                                       
CONECT   13   12   14   16                                                  
CONECT   14   13   15                                                       
CONECT   15   14                                                            
CONECT   16   13    3   17                                                  
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   40    0
END

View in JSmol

Synonyms

Value	Source
5-[(R)-Methanesulphinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile	Generator

Chemical Formula

C₁₃H₁₁N₃O₂S

Average Mass

273.3100 Da

Monoisotopic Mass

273.05720 Da

IUPAC Name

5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile

Traditional Name

5-[(R)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile

CAS Registry Number

Not Available

SMILES

COC1=CC(=NC(C#N)=C1[S@@+](C)[O-])C1=CC=CC=N1

InChI Identifier

InChI=1S/C13H11N3O2S/c1-18-12-7-10(9-5-3-4-6-15-9)16-11(8-14)13(12)19(2)17/h3-7H,1-2H3/t19-/m1/s1

InChI Key

CEEFKOCHZZDNPV-LJQANCHMSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Streptomyces californicus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as bipyridines and oligopyridines. These are organic compounds containing two pyridine rings linked to each other.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Pyridines and derivatives

Sub Class

Bipyridines and oligopyridines

Direct Parent

Bipyridines and oligopyridines

Alternative Parents

Substituents

Bipyridine
Alkyl aryl ether
Heteroaromatic compound
Sulfoxide
Ether
Carbonitrile
Nitrile
Sulfinyl compound
Azacycle
Organosulfur compound
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Organopnictogen compound
Organic nitrogen compound
Organic oxide
Hydrocarbon derivative
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.77	ChemAxon
pKa (Strongest Acidic)	19.06	ChemAxon
pKa (Strongest Basic)	2.81	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	75.87 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	72.31 m³·mol⁻¹	ChemAxon
Polarizability	27.55 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

162927989

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile (NP0251475)

MOL for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

3D MOL for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

3D SDF for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

3D-SDF for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

PDB for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

3D PDB for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

SMILES for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

INCHI for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

Structure for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)

3D Structure for NP0251475 (5-[(r)-methanesulfinyl]-4-methoxy-[2,2'-bipyridine]-6-carbonitrile)