NP-MRD: Showing NP-Card for 2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione (NP0250848)

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Record Information

Version

2.0

Created at

2022-09-07 13:49:46 UTC

Updated at

2022-09-07 13:49:46 UTC

NP-MRD ID

NP0250848

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione

Description

2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione is found in Myrsine africana.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072215492D          

 43 45  0  0  0  0            999 V2000
    6.4560   -7.5675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

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M  END


  Mrv1652309072215492D          

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   11.4451   -8.1075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.0688   -8.6476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8483   -8.3776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4720   -8.9177    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2515   -8.6476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4074   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.1870   -7.5675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3429   -6.7573    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7192   -6.2172    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.1224   -6.4873    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2783   -5.6771    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.7461   -7.0274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5256   -6.7573    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.1493   -7.2974    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.9288   -7.0274    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.5525   -7.5675    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.3320   -7.2974    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   19.3965   -8.3776    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0202   -8.9177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   18.6170   -8.6476    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4611   -9.4578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.6815   -9.7278    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.5256  -10.5379    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.7461  -10.8080    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.5902  -11.6181    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8106  -11.8882    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6547  -12.6983    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8751  -12.9683    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.7192  -13.7785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.9397  -14.0485    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7838  -14.8587    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.9934   -8.1075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.2138   -8.3776    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   16.5902   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8106   -8.1075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.6547   -8.9177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 15 17  1  0  0  0  0
 17 18  2  0  0  0  0
 17 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 25  2  0  0  0  0
 25 26  1  0  0  0  0
 25 27  1  0  0  0  0
 27 28  1  0  0  0  0
 28 29  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 27 39  2  0  0  0  0
 21 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 19 41  2  0  0  0  0
 41 42  1  0  0  0  0
 14 42  1  0  0  0  0
 42 43  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0250848

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCCCCCCCCC1=C(O)C(=O)C2=C(OC3=C(CCCCCCCCCCC)C(O)=C(O)C=C3O2)C1=O

> <INCHI_IDENTIFIER>
InChI=1S/C36H54O7/c1-3-5-7-9-11-13-14-16-17-19-21-23-26-31(39)33(41)36-35(32(26)40)43-34-27(30(38)28(37)25-29(34)42-36)24-22-20-18-15-12-10-8-6-4-2/h25,37-39H,3-24H2,1-2H3

> <INCHI_KEY>
CVSBACKAPROJPF-UHFFFAOYSA-N

> <FORMULA>
C36H54O7

> <MOLECULAR_WEIGHT>
598.821

> <EXACT_MASS>
598.386954079

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
97

> <JCHEM_AVERAGE_POLARIZABILITY>
73.41061817251737

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2,7,8-trihydroxy-3-tridecyl-6-undecyl-1,4-dihydrooxanthrene-1,4-dione

> <JCHEM_LOGP>
11.53611849266667

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA>
7.326101472885941

> <JCHEM_PKA_STRONGEST_ACIDIC>
6.301574868629682

> <JCHEM_PKA_STRONGEST_BASIC>
2.4388026528808315

> <JCHEM_POLAR_SURFACE_AREA>
113.29000000000002

> <JCHEM_REFRACTIVITY>
173.97489999999996

> <JCHEM_ROTATABLE_BOND_COUNT>
22

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      12.051 -14.126   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      13.506 -13.622   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      14.670 -14.630   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      16.126 -14.126   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      17.290 -15.134   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      18.745 -14.630   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      19.909 -15.638   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      21.364 -15.134   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      22.528 -16.142   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      23.984 -15.638   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      25.148 -16.646   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      26.603 -16.142   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      26.894 -14.630   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      28.349 -14.126   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      28.640 -12.614   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0      27.476 -11.606   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      30.095 -12.110   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      30.386 -10.597   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      31.259 -13.118   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      32.714 -12.614   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      33.879 -13.622   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      35.334 -13.118   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      36.498 -14.126   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      37.953 -13.622   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      36.207 -15.638   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      37.371 -16.646   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      34.752 -16.142   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      34.461 -17.654   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      33.006 -18.159   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      32.714 -19.671   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      31.259 -20.175   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      30.968 -21.687   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      29.513 -22.191   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      29.222 -23.703   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      27.767 -24.208   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      27.476 -25.720   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      26.021 -26.224   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      25.730 -27.736   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      33.588 -15.134   0.000  0.00  0.00           C+0
HETATM   40  O   UNK     0      32.132 -15.638   0.000  0.00  0.00           O+0
HETATM   41  C   UNK     0      30.968 -14.630   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      29.513 -15.134   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      29.222 -16.646   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   42                                                  
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20   41                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   39                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28   39                                                  
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37                                                            
CONECT   39   27   21   40                                                  
CONECT   40   39   41                                                       
CONECT   41   40   19   42                                                  
CONECT   42   41   14   43                                                  
CONECT   43   42                                                            
MASTER        0    0    0    0    0    0    0    0   43    0   90    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₆H₅₄O₇

Average Mass

598.8210 Da

Monoisotopic Mass

598.38695 Da

IUPAC Name

2,7,8-trihydroxy-3-tridecyl-6-undecyl-1,4-dihydrooxanthrene-1,4-dione

Traditional Name

2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione

CAS Registry Number

Not Available

SMILES

CCCCCCCCCCCCCC1=C(O)C(=O)C2=C(OC3=C(CCCCCCCCCCC)C(O)=C(O)C=C3O2)C1=O

InChI Identifier

InChI=1S/C36H54O7/c1-3-5-7-9-11-13-14-16-17-19-21-23-26-31(39)33(41)36-35(32(26)40)43-34-27(30(38)28(37)25-29(34)42-36)24-22-20-18-15-12-10-8-6-4-2/h25,37-39H,3-24H2,1-2H3

InChI Key

CVSBACKAPROJPF-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Myrsine africana	LOTUS Database	35616633

Chemical Taxonomy

Classification

Not classified

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	11.54	ChemAxon
pKa (Strongest Acidic)	6.3	ChemAxon
pKa (Strongest Basic)	2.44	ChemAxon
Physiological Charge	-1	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	113.29 Å²	ChemAxon
Rotatable Bond Count	22	ChemAxon
Refractivity	173.97 m³·mol⁻¹	ChemAxon
Polarizability	73.41 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione (NP0250848)

MOL for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

3D MOL for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

3D SDF for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

3D-SDF for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

PDB for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

3D PDB for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

SMILES for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

INCHI for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

Structure for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)

3D Structure for NP0250848 (2,7,8-trihydroxy-3-tridecyl-6-undecyloxanthrene-1,4-dione)