NP-MRD: Showing NP-Card for (1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione (NP0250618)

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Record Information

Version

2.0

Created at

2022-09-07 13:30:03 UTC

Updated at

2022-09-07 13:30:03 UTC

NP-MRD ID

NP0250618

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione

Description

Ochraceolide B belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. (1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione was first documented in 1996 (PMID: 8759161). Based on a literature review very few articles have been published on Ochraceolide B.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072215302D          

 34 40  0  0  1  0            999 V2000
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    4.4196    0.3739    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

     RDKit          3D

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M  END


  Mrv1652309072215302D          

 34 40  0  0  1  0            999 V2000
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   -0.2945   -1.1240    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9476   -1.6281    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  2  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  1  0  0  0
  8 10  1  0  0  0  0
  2 10  1  0  0  0  0
 10 11  1  1  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
  8 15  1  0  0  0  0
 15 16  1  1  0  0  0
 16 17  1  0  0  0  0
 18 17  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  1  1  0  0  0
 20 21  1  0  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 19 23  1  0  0  0  0
 23 24  1  1  0  0  0
 23 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 18 27  1  0  0  0  0
 13 27  1  0  0  0  0
 27 28  1  6  0  0  0
 21 29  1  6  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 20 32  1  6  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 32 34  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0250618

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]12C[C@H]3OC(=O)[C@]4(CO4)[C@H]3[C@@H]1[C@H]1CC[C@@H]3[C@@]4(C)CCC(=O)C(C)(C)[C@@H]4CC[C@@]3(C)[C@]1(C)CC2

> <INCHI_IDENTIFIER>
InChI=1S/C30H44O4/c1-25(2)19-9-12-29(6)20(27(19,4)11-10-21(25)31)8-7-17-22-23-18(34-24(32)30(23)16-33-30)15-26(22,3)13-14-28(17,29)5/h17-20,22-23H,7-16H2,1-6H3/t17-,18-,19+,20-,22+,23-,26+,27+,28-,29-,30+/m1/s1

> <INCHI_KEY>
BSKDFVKLMLKTPZ-CIKWVUGESA-N

> <FORMULA>
C30H44O4

> <MOLECULAR_WEIGHT>
468.678

> <EXACT_MASS>
468.323959897

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
78

> <JCHEM_AVERAGE_POLARIZABILITY>
54.11541790288935

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1R,2R,5R,10R,11R,14R,15S,16S,17R,20R,22S)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0^{2,11}.0^{5,10}.0^{15,22}.0^{16,20}]tetracosane-17,2'-oxirane]-7,18-dione

> <JCHEM_LOGP>
5.825715762

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.9621704373666

> <JCHEM_PKA_STRONGEST_BASIC>
-4.279708264154591

> <JCHEM_POLAR_SURFACE_AREA>
55.900000000000006

> <JCHEM_REFRACTIVITY>
129.6659

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,5R,10R,11R,14R,15S,16S,17R,20R,22S)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0^{2,11}.0^{5,10}.0^{15,22}.0^{16,20}]tetracosane-17,2'-oxirane]-7,18-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       9.768   0.956   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.250   0.698   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.259   2.238   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       8.768  -0.752   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      10.283  -1.029   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       7.771  -1.926   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.256  -1.650   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.738  -0.200   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.741  -1.373   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.735   0.974   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.217   2.425   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       4.702   2.701   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.705   1.527   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.187   2.977   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.223   0.077   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.226  -1.097   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.711  -0.821   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       1.193   0.630   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -0.322   0.906   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -1.541  -0.035   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -2.813   0.834   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      -2.379   2.311   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      -0.840   2.356   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      -1.507   3.744   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       0.157   3.530   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       1.672   3.254   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       2.190   1.803   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       2.306   3.339   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -4.032  -0.107   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -3.514  -1.558   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -4.382  -2.829   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -1.974  -1.513   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -0.550  -2.098   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -1.769  -3.039   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4   10                                             
CONECT    3    2                                                            
CONECT    4    2    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10   15                                             
CONECT    9    8                                                            
CONECT   10    8    2   11                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14   15   27                                             
CONECT   14   13                                                            
CONECT   15   13    8   16                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   27                                                  
CONECT   19   18   20   23                                                  
CONECT   20   19   21   32                                                  
CONECT   21   20   22   29                                                  
CONECT   22   21   23                                                       
CONECT   23   22   19   24   25                                             
CONECT   24   23                                                            
CONECT   25   23   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   18   13   28                                             
CONECT   28   27                                                            
CONECT   29   21   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   20   33   34                                             
CONECT   33   32   34                                                       
CONECT   34   33   32                                                       
MASTER        0    0    0    0    0    0    0    0   34    0   80    0
END

View in JSmol

Synonyms

Value	Source
20,29-Epoxy-3-oxolupan-30,21alpha-olide	MeSH

Chemical Formula

C₃₀H₄₄O₄

Average Mass

468.6780 Da

Monoisotopic Mass

468.32396 Da

IUPAC Name

(1R,2R,5R,10R,11R,14R,15S,16S,17R,20R,22S)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0^{2,11}.0^{5,10}.0^{15,22}.0^{16,20}]tetracosane-17,2'-oxirane]-7,18-dione

Traditional Name

(1R,2R,5R,10R,11R,14R,15S,16S,17R,20R,22S)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0^{2,11}.0^{5,10}.0^{15,22}.0^{16,20}]tetracosane-17,2'-oxirane]-7,18-dione

CAS Registry Number

Not Available

SMILES

C[C@]12C[C@H]3OC(=O)[C@]4(CO4)[C@H]3[C@@H]1[C@H]1CC[C@@H]3[C@@]4(C)CCC(=O)C(C)(C)[C@@H]4CC[C@@]3(C)[C@]1(C)CC2

InChI Identifier

InChI=1S/C30H44O4/c1-25(2)19-9-12-29(6)20(27(19,4)11-10-21(25)31)8-7-17-22-23-18(34-24(32)30(23)16-33-30)15-26(22,3)13-14-28(17,29)5/h17-20,22-23H,7-16H2,1-6H3/t17-,18-,19+,20-,22+,23-,26+,27+,28-,29-,30+/m1/s1

InChI Key

BSKDFVKLMLKTPZ-CIKWVUGESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Triterpenoids

Direct Parent

Triterpenoids

Alternative Parents

Substituents

Triterpenoid
Steroid
Gamma butyrolactone
Tetrahydrofuran
Carboxylic acid ester
Ketone
Lactone
Cyclic ketone
Carboxylic acid derivative
Dialkyl ether
Oxirane
Ether
Oxacycle
Monocarboxylic acid or derivatives
Organoheterocyclic compound
Organic oxide
Hydrocarbon derivative
Carbonyl group
Organooxygen compound
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.83	ChemAxon
pKa (Strongest Acidic)	19.96	ChemAxon
pKa (Strongest Basic)	-4.3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	55.9 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	129.67 m³·mol⁻¹	ChemAxon
Polarizability	54.12 Å³	ChemAxon
Number of Rings	7	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

23339697

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

44566889

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sturm S, Gil RR, Chai HB, Ngassapa OD, Santisuk T, Reutrakul V, Howe A, Moss M, Besterman JM, Yang SL, Farthing JE, Tait RM, Lewis JA, O'Neill MJ, Farnsworth NR, Cordell GA, Pezzuto JM, Kinghorn AD: Lupane derivatives from Lophopetalum wallichii with farnesyl protein transferase inhibitory activity. J Nat Prod. 1996 Jul;59(7):658-63. doi: 10.1021/np960370u. [PubMed:8759161 ]
LOTUS database [Link]

Showing NP-Card for (1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione (NP0250618)

MOL for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

3D MOL for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

3D SDF for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

3D-SDF for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

PDB for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

3D PDB for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

SMILES for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

INCHI for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

Structure for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)

3D Structure for NP0250618 ((1r,2r,5r,10r,11r,14r,15s,16s,17r,20r,22s)-1,2,6,6,10,22-hexamethyl-19-oxaspiro[hexacyclo[12.10.0.0²,¹¹.0⁵,¹⁰.0¹⁵,²².0¹⁶,²⁰]tetracosane-17,2'-oxirane]-7,18-dione)