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Showing NP-Card for tridec-12-en-2-one (NP0250103)

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Record Information
Version2.0
Created at2022-09-07 12:50:56 UTC
Updated at2022-09-07 12:50:56 UTC
NP-MRD IDNP0250103
Secondary Accession NumbersNone
Natural Product Identification
Common Nametridec-12-en-2-one
Description12-Tridecen-2-one belongs to the class of organic compounds known as ketones. These are organic compounds in which a carbonyl group is bonded to two carbon atoms R2C=O (neither R may be a hydrogen atom). Ketones that have one or more alpha-hydrogen atoms undergo keto-enol tautomerization, the tautomer being an enol. Thus, 12-tridecen-2-one is considered to be an oxygenated hydrocarbon lipid molecule. tridec-12-en-2-one is found in Litsea elliptica. 12-Tridecen-2-one is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral.
Structure
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MOL3D MOLSDFPDBSMILESInChI

MOL for NP0250103 (tridec-12-en-2-one)


  Mrv0541 05031421222D          

 14 13  0  0  0  0            999 V2000
    5.4730    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0467    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1875    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6164    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3309    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0454    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7599    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4743    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1888    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9033    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6177    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    2.7474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  2  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13  2  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  2  0  0  0  0
M  END
Download

3D MOL for NP0250103 (tridec-12-en-2-one)

     RDKit          3D

 38 37  0  0  0  0  0  0  0  0999 V2000
    5.0253   -0.5380    1.8517 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7338    0.3264    0.9817 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7094   -0.0530   -0.0992 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6045    0.9533   -0.0569 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5658    0.6359   -1.0984 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9378   -0.7065   -0.8328 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0774   -0.9959   -1.8969 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1552    0.0431   -1.9448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8779    0.1337   -0.6242 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5390   -1.1525   -0.2063 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2430   -0.9393    1.1370 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2774    0.1210    1.0211 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1223    1.5142    1.4902 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3443   -0.1736    0.4982 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.2672   -1.2044    2.5444 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.9159    0.3084    2.4905 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0966    1.3646    0.8458 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2345   -0.0910   -1.0666 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3389   -1.0567    0.1391 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0766    0.8788    0.9356 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9846    1.9850   -0.1764 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0192    0.6953   -2.0926 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7671    1.4075   -1.0085 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6919   -1.5308   -0.8100 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4511   -0.7011    0.1854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5598   -1.9858   -1.6883 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4555   -1.1063   -2.8656 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7320    1.0233   -2.2499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9016   -0.1845   -2.7613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1876    0.4701    0.1853 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6226    0.9600   -0.7108 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7293   -1.9041   -0.0312 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2101   -1.5740   -0.9576 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4401   -0.6605    1.8652 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6364   -1.9134    1.4862 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8018    1.7182    2.3179 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3323    2.1604    0.5929 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0856    1.7720    1.7907 H   0  0  0  0  0  0  0  0  0  0  0  0
 13 12  1  0
 12 14  2  0
 12 11  1  0
 11 10  1  0
 10  9  1  0
  9  8  1  0
  8  7  1  0
  7  6  1  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3  2  1  0
  2  1  2  3
 13 36  1  0
 13 37  1  0
 13 38  1  0
 11 34  1  0
 11 35  1  0
 10 32  1  0
 10 33  1  0
  9 30  1  0
  9 31  1  0
  8 28  1  0
  8 29  1  0
  7 26  1  0
  7 27  1  0
  6 24  1  0
  6 25  1  0
  5 22  1  0
  5 23  1  0
  4 20  1  0
  4 21  1  0
  3 18  1  0
  3 19  1  0
  2 17  1  0
  1 15  1  0
  1 16  1  0
M  END
Download

3D SDF for NP0250103 (tridec-12-en-2-one)


  Mrv0541 05031421222D          

 14 13  0  0  0  0            999 V2000
    5.4730    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.0467    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1875    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9020    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6164    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3309    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0454    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7599    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4743    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.1888    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9033    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6177    3.9849    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    3.5724    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.3322    2.7474    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  2  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 13  2  1  0  0  0  0
 13 12  1  0  0  0  0
 14 13  2  0  0  0  0
M  END
> <DATABASE_ID>
NP0250103

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)CCCCCCCCCC=C

> <INCHI_IDENTIFIER>
InChI=1S/C13H24O/c1-3-4-5-6-7-8-9-10-11-12-13(2)14/h3H,1,4-12H2,2H3

> <INCHI_KEY>
UYCZPLKICNDOCL-UHFFFAOYSA-N

> <FORMULA>
C13H24O

> <MOLECULAR_WEIGHT>
196.3291

> <EXACT_MASS>
196.18271539

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_AVERAGE_POLARIZABILITY>
25.93374403586006

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
tridec-12-en-2-one

> <ALOGPS_LOGP>
4.85

> <JCHEM_LOGP>
4.503945654

> <ALOGPS_LOGS>
-5.47

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
19.64344776069631

> <JCHEM_PKA_STRONGEST_BASIC>
-7.270866249933757

> <JCHEM_POLAR_SURFACE_AREA>
17.07

> <JCHEM_REFRACTIVITY>
62.2748

> <JCHEM_ROTATABLE_BOND_COUNT>
10

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
6.62e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
tridec-12-en-2-one

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for NP0250103 (tridec-12-en-2-one)

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PDB for NP0250103 (tridec-12-en-2-one)
HEADER    PROTEIN                                 03-MAY-14   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   03-MAY-14         0                                  
HETATM    1  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0       0.000   0.000   0.000  0.00  0.00           O+0
CONECT    1    3                                                            
CONECT    2   13                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13    2   12   14                                                  
CONECT   14   13                                                            
MASTER        0    0    0    0    0    0    0    0   14    0   26    0
END

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3D PDB for NP0250103 (tridec-12-en-2-one)
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SMILES for NP0250103 (tridec-12-en-2-one)
CC(=O)CCCCCCCCCC=C
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INCHI for NP0250103 (tridec-12-en-2-one)
InChI=1S/C13H24O/c1-3-4-5-6-7-8-9-10-11-12-13(2)14/h3H,1,4-12H2,2H3
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View in JSmol
SynonymsNot Available
Chemical FormulaC13H24O
Average Mass196.3291 Da
Monoisotopic Mass196.18272 Da
IUPAC Nametridec-12-en-2-one
Traditional Nametridec-12-en-2-one
CAS Registry NumberNot Available
SMILES
CC(=O)CCCCCCCCCC=C
InChI Identifier
InChI=1S/C13H24O/c1-3-4-5-6-7-8-9-10-11-12-13(2)14/h3H,1,4-12H2,2H3
InChI KeyUYCZPLKICNDOCL-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Litsea ellipticaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as ketones. These are organic compounds  in which a carbonyl group is bonded to two carbon atoms R2C=O (neither R may be a hydrogen atom). Ketones that have one or more alpha-hydrogen atoms undergo keto-enol tautomerization, the tautomer being an enol.
KingdomOrganic compounds  
Super ClassOrganic oxygen compounds  
ClassOrganooxygen compounds  
Sub ClassCarbonyl compounds  
Direct ParentKetones  
Alternative Parents
Substituents
  • Ketone
    • 

  • Organic oxide
    • 

  • Hydrocarbon derivative
    • 

  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.85ALOGPS
logP4.5ChemAxon
logS-5.5ALOGPS
pKa (Strongest Acidic)19.64ChemAxon
pKa (Strongest Basic)-7.3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area17.07 ŲChemAxon
Rotatable Bond Count10ChemAxon
Refractivity62.27 m³·mol⁻¹ChemAxon
Polarizability25.93 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10888854  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]