NP-MRD: Showing NP-Card for (3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one (NP0249070)

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Record Information

Version

2.0

Created at

2022-09-07 11:31:49 UTC

Updated at

2022-09-07 11:31:49 UTC

NP-MRD ID

NP0249070

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one

Description

(5S)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-2H-1-benzoxocin-2-one belongs to the class of organic compounds known as oxocins. Oxocins are compounds containing an oxocin ring, which is a eight-member unsaturated aromatic ring containing one oxygen atom and seven carbon atoms. (3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one is found in Styphnolobium japonicum. Based on a literature review very few articles have been published on (5S)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-2H-1-benzoxocin-2-one.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 39 41  0  0  0  0  0  0  0  0999 V2000
   -6.6384   -0.1934   -0.4681 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5868   -0.3689    0.4364 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2596   -0.1052    0.2258 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8024    0.3949   -0.9714 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4394    0.6273   -1.0847 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5723    0.3708   -0.0467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0319   -0.1297    1.1501 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3803   -0.3670    1.2843 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4328   -0.4977    2.3853 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1771   -1.0278    2.7128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0908   -1.6931    3.7525 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0904   -0.8872    1.9495 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5085   -0.0131    1.0229 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8562   -0.1808    0.5405 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7937   -0.9315    1.2080 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0699   -1.1417    0.6765 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3973   -0.5860   -0.5345 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6795   -0.8032   -1.0514 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.4748    0.1756   -1.2308 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2122    0.3668   -0.6830 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7166    1.1446    0.4861 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5624    2.1649    0.1269 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2315    0.7629   -0.5961 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6296   -0.9646   -1.2779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6101   -0.2522    0.0850 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5434    0.8162   -0.9187 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4810    0.6043   -1.8093 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0867    1.0196   -2.0258 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7193   -0.7605    2.2385 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8065   -1.6387    2.1601 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5694   -1.3579    2.1759 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7640   -1.7550    1.2664 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9059   -0.3839   -1.9460 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7543    0.6032   -2.1835 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5239    0.9395   -1.2770 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1125    1.5961    1.3536 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1064    2.9014   -0.3493 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3586    1.6346   -1.2801 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1675   -0.0835   -1.1613 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6 23  1  0
 23 21  1  0
 21 22  1  0
 21 13  1  0
 13 12  2  0
 12 10  1  0
 10 11  2  0
 10  9  1  0
  9  7  1  0
  7  8  2  0
 13 14  1  0
 14 15  2  0
 15 16  1  0
 16 17  2  0
 17 18  1  0
 17 19  1  0
 19 20  2  0
  8  3  1  0
 20 14  1  0
  7  6  1  0
  1 24  1  0
  1 25  1  0
  1 26  1  0
  4 27  1  0
  5 28  1  0
 23 38  1  0
 23 39  1  0
 21 36  1  1
 22 37  1  0
 12 30  1  0
  8 29  1  0
 15 31  1  0
 16 32  1  0
 18 33  1  0
 19 34  1  0
 20 35  1  0
M  END


  Mrv1652309072213312D          

 23 25  0  0  1  0            999 V2000
   -2.3569   -0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6425    0.0281    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9280   -0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9280   -1.2094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2135   -1.6219    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5009   -1.2094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5009   -0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2135    0.0281    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0843    0.1990    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9093    0.1990    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2250    0.9612    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4927   -0.3844    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4927   -1.2094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2549   -1.5251    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9094   -1.0229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6716   -1.3386    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7793   -2.1565    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5415   -2.4722    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1248   -2.6588    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3626   -2.3430    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9093   -1.7928    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2250   -2.5550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0843   -1.7928    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 17 19  1  0  0  0  0
 19 20  2  0  0  0  0
 14 20  1  0  0  0  0
 13 21  1  0  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
  6 23  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0249070

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C2C[C@H](O)\C(=C/C(=O)OC2=C1)C1=CC=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C18H16O5/c1-22-14-7-4-12-8-16(20)15(10-18(21)23-17(12)9-14)11-2-5-13(19)6-3-11/h2-7,9-10,16,19-20H,8H2,1H3/b15-10-/t16-/m0/s1

> <INCHI_KEY>
NNKBWPSPOJTUBL-IZNAZMGOSA-N

> <FORMULA>
C18H16O5

> <MOLECULAR_WEIGHT>
312.321

> <EXACT_MASS>
312.099773615

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
39

> <JCHEM_AVERAGE_POLARIZABILITY>
32.48926187218156

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(5S)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-2H-1-benzoxocin-2-one

> <JCHEM_LOGP>
2.8303145353333328

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.358695925366526

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.260585818072848

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0990508024606322

> <JCHEM_POLAR_SURFACE_AREA>
75.99000000000001

> <JCHEM_REFRACTIVITY>
85.08720000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(5S)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.400  -0.718   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      -3.066   0.052   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      -1.732  -0.718   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -1.732  -2.258   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -0.399  -3.028   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       0.935  -2.258   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       0.935  -0.718   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.399   0.052   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       2.024   0.371   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       3.564   0.371   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       4.153   1.794   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.653  -0.718   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       4.653  -2.258   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       6.076  -2.847   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       7.298  -1.909   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       8.720  -2.499   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       8.921  -4.026   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      10.344  -4.615   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       7.700  -4.963   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.277  -4.374   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.564  -3.346   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       4.153  -4.769   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       2.024  -3.346   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   23                                                  
CONECT    7    6    8    9                                                  
CONECT    8    7    3                                                       
CONECT    9    7   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13                                                       
CONECT   13   12   14   21                                                  
CONECT   14   13   15   20                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18   19                                                  
CONECT   18   17                                                            
CONECT   19   17   20                                                       
CONECT   20   19   14                                                       
CONECT   21   13   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21    6                                                       
MASTER        0    0    0    0    0    0    0    0   23    0   50    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₈H₁₆O₅

Average Mass

312.3210 Da

Monoisotopic Mass

312.09977 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

COC1=CC=C2C[C@H](O)\C(=C/C(=O)OC2=C1)C1=CC=C(O)C=C1

InChI Identifier

InChI=1S/C18H16O5/c1-22-14-7-4-12-8-16(20)15(10-18(21)23-17(12)9-14)11-2-5-13(19)6-3-11/h2-7,9-10,16,19-20H,8H2,1H3/b15-10-/t16-/m0/s1

InChI Key

NNKBWPSPOJTUBL-IZNAZMGOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Styphnolobium japonicum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as oxocins. Oxocins are compounds containing an oxocin ring, which is a eight-member unsaturated aromatic ring containing one oxygen atom and seven carbon atoms.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Oxocins

Sub Class

Not Available

Direct Parent

Oxocins

Alternative Parents

Substituents

Anisole
Oxocin
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Phenol
Monocyclic benzene moiety
Benzenoid
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Secondary alcohol
Lactone
Carboxylic acid ester
Oxacycle
Carboxylic acid derivative
Monocarboxylic acid or derivatives
Ether
Alcohol
Organooxygen compound
Carbonyl group
Hydrocarbon derivative
Organic oxide
Organic oxygen compound
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163191191

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one (NP0249070)

MOL for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

3D MOL for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

3D SDF for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

3D-SDF for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

PDB for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

3D PDB for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

SMILES for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

INCHI for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

Structure for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)

3D Structure for NP0249070 ((3z,5s)-5-hydroxy-4-(4-hydroxyphenyl)-9-methoxy-5,6-dihydro-1-benzoxocin-2-one)