NP-MRD: Showing NP-Card for 2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane (NP0248515)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-07 10:48:17 UTC

Updated at

2022-09-07 10:48:17 UTC

NP-MRD ID

NP0248515

Secondary Accession Numbers

None

Natural Product Identification

Common Name

2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane

Description

Isoaromadendrene epoxide belongs to the class of organic compounds known as 5,10-cycloaromadendrane sesquiterpenoids. These are aromadendrane sesquiterpenoids that arise from the C5-C10 cyclization of the aromadendrane skeleton. 2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane is found in Artemisia carvifolia and Cyperus rotundus. 2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane was first documented in 2007 (PMID: 17727060). Based on a literature review a small amount of articles have been published on Isoaromadendrene epoxide (PMID: 34034579) (PMID: 29103900) (PMID: 28701650) (PMID: 28284424).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 40 43  0  0  0  0  0  0  0  0999 V2000
   -0.2925   -2.7355   -0.8997 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0730   -1.7075   -0.1663 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4058   -1.3833   -0.7583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5785    0.1276   -0.6729 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4728    0.5178    0.3201 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.3521   -0.3496   -0.1230 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7432   -0.5090    0.8910 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5552    0.6838    1.1301 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.2594    1.8227    0.2136 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0165    2.5527    0.5285 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.6894    2.3219    1.7070 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2421    1.9558    0.3753 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.4616    2.8176    0.0159 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1591   -0.5835    0.5489 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6814   -0.5628   -0.8536 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0540   -1.3880    1.5016 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3633   -2.2716   -1.6535 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3682   -3.2561   -0.1582 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9691   -3.5124   -1.3180 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1824   -1.9940    0.9193 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1790   -1.9052   -0.1394 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4972   -1.7582   -1.7753 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3451    0.5604   -1.6796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5641    0.4222   -0.2919 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8389    0.1127    1.3090 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0050   -0.0986   -1.1362 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4019   -1.0624    1.8131 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9218    0.9790    2.1289 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1976    1.5318   -0.8641 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1547    2.5113    0.2573 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0877    3.6615    0.3299 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3370    2.5654    0.6133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1898    3.9072    0.0722 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6275    2.6166   -1.0626 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6183    0.0356   -0.8984 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9877   -0.1964   -1.6053 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9349   -1.6255   -1.1188 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6079   -1.4491    2.5157 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0655   -0.9169    1.5167 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1479   -2.4380    1.1399 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  6
  8 14  1  0
 14 15  1  0
 14 16  1  0
  6  2  1  0
 14  7  1  0
 12  5  1  0
 12 10  1  0
  1 17  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  1
  3 21  1  0
  3 22  1  0
  4 23  1  0
  4 24  1  0
  5 25  1  1
  6 26  1  6
  7 27  1  1
  8 28  1  1
  9 29  1  0
  9 30  1  0
 10 31  1  6
 13 32  1  0
 13 33  1  0
 13 34  1  0
 15 35  1  0
 15 36  1  0
 15 37  1  0
 16 38  1  0
 16 39  1  0
 16 40  1  0
M  END


  Mrv1652309072212482D          

 16 19  0  0  0  0            999 V2000
    4.3622    2.0772    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5776    1.8223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9102    2.3072    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2427    1.8223    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4977    1.0377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3227    1.0377    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8370    0.3927    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6534   -0.4116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9102   -0.7696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1669   -0.4116    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3785   -0.1685    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9833    0.3927    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3785    0.9538    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4418   -0.1685    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9954   -0.7802    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2060    0.1425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  2  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 10 12  1  0  0  0  0
  5 12  1  0  0  0  0
 12 13  1  0  0  0  0
  8 14  1  0  0  0  0
  7 14  1  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0248515

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1CCC2C1C1C(CC3OC23C)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C15H24O/c1-8-5-6-9-12(8)13-10(14(13,2)3)7-11-15(9,4)16-11/h8-13H,5-7H2,1-4H3

> <INCHI_KEY>
GLKQAHXBJLGAFT-UHFFFAOYSA-N

> <FORMULA>
C15H24O

> <MOLECULAR_WEIGHT>
220.356

> <EXACT_MASS>
220.182715393

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
40

> <JCHEM_AVERAGE_POLARIZABILITY>
26.80902457266972

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0^{2,4}.0^{6,8}]dodecane

> <JCHEM_LOGP>
3.265302384333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.226555970590289

> <JCHEM_POLAR_SURFACE_AREA>
12.53

> <JCHEM_REFRACTIVITY>
64.4514

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0^{2,4}.0^{6,8}]dodecane

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       8.143   3.878   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       6.678   3.402   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.432   4.307   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.186   3.402   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       4.662   1.937   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       6.202   1.937   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       7.162   0.733   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.820  -0.768   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       5.432  -1.437   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       4.045  -0.768   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       2.573  -0.314   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       3.702   0.733   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.573   1.780   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       8.291  -0.314   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       9.325  -1.456   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.718   0.266   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    6                                                  
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   12                                                  
CONECT    6    5    2    7                                                  
CONECT    7    6    8   14                                                  
CONECT    8    7    9   14                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10   12                                                       
CONECT   12   11   10    5   13                                             
CONECT   13   12                                                            
CONECT   14    8    7   15   16                                             
CONECT   15   14                                                            
CONECT   16   14                                                            
MASTER        0    0    0    0    0    0    0    0   16    0   38    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₄O

Average Mass

220.3560 Da

Monoisotopic Mass

220.18272 Da

IUPAC Name

2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0^{2,4}.0^{6,8}]dodecane

Traditional Name

2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0^{2,4}.0^{6,8}]dodecane

CAS Registry Number

Not Available

SMILES

CC1CCC2C1C1C(CC3OC23C)C1(C)C

InChI Identifier

InChI=1S/C15H24O/c1-8-5-6-9-12(8)13-10(14(13,2)3)7-11-15(9,4)16-11/h8-13H,5-7H2,1-4H3

InChI Key

GLKQAHXBJLGAFT-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Artemisia carvifolia	LOTUS Database	35616633
Cyperus rotundus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 5,10-cycloaromadendrane sesquiterpenoids. These are aromadendrane sesquiterpenoids that arise from the C5-C10 cyclization of the aromadendrane skeleton.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Sesquiterpenoids

Direct Parent

5,10-cycloaromadendrane sesquiterpenoids

Alternative Parents

Substituents

5,10-cycloaromadendrane sesquiterpenoid
Oxacycle
Organoheterocyclic compound
Ether
Oxirane
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.27	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	12.53 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	64.45 m³·mol⁻¹	ChemAxon
Polarizability	26.81 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

465571

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

534398

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Souza AO, Pereira PS, Fernandes CC, Andrade G, Pires RH, Candido ACBB, Magalhaes LG, Vieira TM, Crotti AEM, Martins CHG, Miranda MLD: Hexane extract from Spiranthera odoratissima A. St.-hil. leaves: chemical composition and its bioactive potential against Candida pathogenic species, Leishmania amazonensis and Xylella fastidiosa. Nat Prod Res. 2022 Jun;36(11):2907-2912. doi: 10.1080/14786419.2021.1931188. Epub 2021 May 25. [PubMed:34034579 ]
Albouchi F, Sifaoui I, Reyes-Batlle M, Lopez-Arencibia A, Pinero JE, Lorenzo-Morales J, Abderrabba M: Chemical composition and anti-Acanthamoeba activity of Melaleuca styphelioides essential oil. Exp Parasitol. 2017 Dec;183:104-108. doi: 10.1016/j.exppara.2017.10.014. Epub 2017 Nov 10. [PubMed:29103900 ]
Hasegawa T, Yoshitome K, Fujihara T, Santoso M, Aziz MA: Characteristic Changes in the Aroma Profile of Patchouli Depending on Manufacturing Process. J Oleo Sci. 2017 Aug 1;66(8):863-869. doi: 10.5650/jos.ess17002. Epub 2017 Jul 12. [PubMed:28701650 ]
Elshamy AI, El-Kashak WA, Abdallah HM, Farrag AH, Nassar MI: Soft coral Cespitularia stolonifera: New cytotoxic ceramides and gastroprotective activity. Chin J Nat Med. 2017 Feb;15(2):105-114. doi: 10.1016/S1875-5364(17)30026-2. [PubMed:28284424 ]
Mei WL, Zeng YB, Liu J, Dai HF: [GC-MS analysis of volatile constituents from five different kinds of Chinese eaglewood]. Zhong Yao Cai. 2007 May;30(5):551-5. [PubMed:17727060 ]
LOTUS database [Link]

Showing NP-Card for 2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane (NP0248515)

MOL for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

3D MOL for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

3D SDF for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

3D-SDF for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

PDB for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

3D PDB for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

SMILES for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

INCHI for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

Structure for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)

3D Structure for NP0248515 (2,7,7,10-tetramethyl-3-oxatetracyclo[7.3.0.0²,⁴.0⁶,⁸]dodecane)