NP-MRD: Showing NP-Card for [5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol (NP0248263)

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Record Information

Version

2.0

Created at

2022-09-07 10:26:59 UTC

Updated at

2022-09-07 10:26:59 UTC

NP-MRD ID

NP0248263

Secondary Accession Numbers

None

Natural Product Identification

Common Name

[5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol

Description

[5-(2H-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol belongs to the class of organic compounds known as 7,9'-epoxylignans. These are lignans that contain the 7,9'-epoxylignan skeleton, which consists of a tetrahydrofuran that carries a phenyl group, a methyl group, and a benzyl group at the 2-, 3-, 4-position, respectively. [5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol is found in Magnolia denudata. [5-(2H-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004191518242D          

 28 31  0  0  0  0            999 V2000
    8.9130    5.1922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5774    4.4386    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7570    4.3523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4214    3.5987    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6009    3.5124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1160    4.1799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4516    4.9335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2720    5.0198    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6076    5.7734    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4281    5.8597    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2955    4.0936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8106    4.7611    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9600    3.3400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3725    2.6255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8204    2.0124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1530    3.1684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5399    3.7205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7114    4.5274    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  6 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 16 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 23 27  1  0  0  0  0
 27 28  2  0  0  0  0
 20 28  1  0  0  0  0
M  END

     RDKit          3D

 52 55  0  0  0  0  0  0  0  0999 V2000
   -6.0607    3.2778   -0.3181 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8728    1.9220    0.0599 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6728    1.2792   -0.1840 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6272    1.9219   -0.7952 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4162    1.3227   -1.0578 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2238    0.0281   -0.7018 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9702   -0.7383   -0.9244 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.7597   -1.4556    0.2770 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1854    0.1868   -1.0648 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.3173    1.0008    0.2146 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8755    0.1061    1.0893 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7417   -0.7358    0.4009 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.0945   -0.4753    0.9036 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2489   -0.3380    2.2830 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4910   -0.0950    2.8269 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5911    0.0128    1.9931 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4231   -0.1252    0.6315 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1709   -0.3721    0.0605 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6572    0.0199   -0.0103 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.4788    0.6614    0.9774 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9533    0.2500    2.2294 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.5284   -0.5136   -1.0532 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5710   -1.7650   -1.8744 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6936   -2.7477   -1.4977 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2546   -0.6531   -0.0834 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4797   -0.0339    0.1778 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5283   -0.6944    0.7961 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3865   -2.0499    1.1914 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1190    3.5801   -0.1992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7638    3.3403   -1.3896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3490    3.9124    0.2354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7844    2.9604   -1.0796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6099    1.8565   -1.5422 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1586   -1.3945   -1.7857 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1872   -0.9935    1.0418 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1319    0.8408   -1.9583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6200    1.3991    0.5932 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0511    1.8213   -0.0095 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5187   -1.8167    0.6393 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4037   -0.4194    2.9416 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6158    0.0130    3.9073 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0382   -0.4812   -0.9913 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5134    0.3311    0.8243 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3585    1.7612    0.9223 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2337    0.2083   -1.5272 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5812   -2.1763   -1.8303 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4232   -1.4435   -2.9435 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0318   -3.6095   -1.8925 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1454   -1.6707    0.2124 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6771   -2.0757    2.0447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9269   -2.6503    0.3701 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3292   -2.4895    1.5244 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6 25  1  0
 25 26  2  0
 26 27  1  0
 27 28  1  0
  6  7  1  0
  7  8  1  0
  7  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 22  1  0
 22 23  1  0
 23 24  1  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 15 16  2  0
 16 21  1  0
 21 20  1  0
 20 19  1  0
 19 17  1  0
 17 18  2  0
 26  3  1  0
 22  9  1  0
 18 13  1  0
 17 16  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  4 32  1  0
  5 33  1  0
 25 49  1  0
 28 50  1  0
 28 51  1  0
 28 52  1  0
  7 34  1  6
  8 35  1  0
  9 36  1  6
 10 37  1  0
 10 38  1  0
 12 39  1  6
 22 45  1  6
 23 46  1  0
 23 47  1  0
 24 48  1  0
 14 40  1  0
 15 41  1  0
 20 43  1  0
 20 44  1  0
 18 42  1  0
M  END


  Mrv1533004191518242D          

 28 31  0  0  0  0            999 V2000
    8.9130    5.1922    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5774    4.4386    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.7570    4.3523    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4214    3.5987    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6009    3.5124    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1160    4.1799    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4516    4.9335    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2720    5.0198    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6076    5.7734    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4281    5.8597    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2955    4.0936    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8106    4.7611    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9600    3.3400    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3725    2.6255    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8204    2.0124    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0668    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1530    3.1684    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5399    3.7205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7114    4.5274    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3523    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    0.6979    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    0.8555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6538    1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1387    2.1904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9233    1.9354    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6378    2.3479    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  3  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  6 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 13 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 16 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 22 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 23 27  1  0  0  0  0
 27 28  2  0  0  0  0
 20 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0248263

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC1=CC=C(C=C1OC)C(O)C1COC(C1CO)C1=CC=C2OCOC2=C1

> <INCHI_IDENTIFIER>
InChI=1S/C21H24O7/c1-24-16-5-3-12(7-18(16)25-2)20(23)15-10-26-21(14(15)9-22)13-4-6-17-19(8-13)28-11-27-17/h3-8,14-15,20-23H,9-11H2,1-2H3

> <INCHI_KEY>
FJXKIGDEXMHOCZ-UHFFFAOYSA-N

> <FORMULA>
C21H24O7

> <MOLECULAR_WEIGHT>
388.416

> <EXACT_MASS>
388.152203113

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
40.700189452407955

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
[5-(2H-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol

> <ALOGPS_LOGP>
1.91

> <JCHEM_LOGP>
1.3464200859999997

> <ALOGPS_LOGS>
-3.44

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.388930646698594

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.069361077896946

> <JCHEM_PKA_STRONGEST_BASIC>
-2.6413698216658847

> <JCHEM_POLAR_SURFACE_AREA>
86.61000000000001

> <JCHEM_REFRACTIVITY>
100.4154

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.42e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[5-(2H-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 19-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   19-APR-15         0                                  
HETATM    1  C   UNK     0      16.638   9.692   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0      16.011   8.285   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0      14.480   8.124   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      13.853   6.717   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      12.322   6.557   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      11.417   7.802   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      12.043   9.209   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.574   9.370   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      14.201  10.777   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      15.732  10.938   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       9.885   7.641   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0       8.980   8.887   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0       9.259   6.235   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.029   4.901   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       8.998   3.756   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       7.591   4.383   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       7.752   5.914   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.608   6.945   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       6.928   8.451   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       6.258   3.613   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       6.258   2.073   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       4.924   1.303   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       3.590   2.073   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       2.126   1.597   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       1.220   2.843   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0       2.126   4.089   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0       3.590   3.613   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       4.924   4.383   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    8                                                  
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    3    9                                                  
CONECT    9    8   10                                                       
CONECT   10    9                                                            
CONECT   11    6   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14   17                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   20                                                  
CONECT   17   16   13   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18                                                            
CONECT   20   16   21   28                                                  
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24   27                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   23   28                                                  
CONECT   28   27   20                                                       
MASTER        0    0    0    0    0    0    0    0   28    0   62    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₁H₂₄O₇

Average Mass

388.4160 Da

Monoisotopic Mass

388.15220 Da

IUPAC Name

[5-(2H-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol

Traditional Name

[5-(2H-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol

CAS Registry Number

Not Available

SMILES

COC1=CC=C(C=C1OC)C(O)C1COC(C1CO)C1=CC=C2OCOC2=C1

InChI Identifier

InChI=1S/C21H24O7/c1-24-16-5-3-12(7-18(16)25-2)20(23)15-10-26-21(14(15)9-22)13-4-6-17-19(8-13)28-11-27-17/h3-8,14-15,20-23H,9-11H2,1-2H3

InChI Key

FJXKIGDEXMHOCZ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Magnolia denudata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 7,9'-epoxylignans. These are lignans that contain the 7,9'-epoxylignan skeleton, which consists of a tetrahydrofuran that carries a phenyl group, a methyl group, and a benzyl group at the 2-, 3-, 4-position, respectively.

Kingdom

Organic compounds

Super Class

Lignans, neolignans and related compounds

Class

Furanoid lignans

Sub Class

Tetrahydrofuran lignans

Direct Parent

7,9'-epoxylignans

Alternative Parents

Substituents

7,9p-epoxylignan
Dimethoxybenzene
O-dimethoxybenzene
Benzodioxole
Anisole
Phenol ether
Phenoxy compound
Methoxybenzene
Alkyl aryl ether
Benzenoid
Monocyclic benzene moiety
Tetrahydrofuran
Secondary alcohol
Oxacycle
Organoheterocyclic compound
Acetal
Dialkyl ether
Ether
Organic oxygen compound
Aromatic alcohol
Hydrocarbon derivative
Organooxygen compound
Alcohol
Primary alcohol
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.91	ALOGPS
logP	1.35	ChemAxon
logS	-3.4	ALOGPS
pKa (Strongest Acidic)	14.07	ChemAxon
pKa (Strongest Basic)	-2.6	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	86.61 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	100.42 m³·mol⁻¹	ChemAxon
Polarizability	40.7 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for [5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol (NP0248263)

MOL for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

3D MOL for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

3D SDF for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

3D-SDF for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

PDB for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

3D PDB for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

SMILES for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

INCHI for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

Structure for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)

3D Structure for NP0248263 ([5-(2h-1,3-benzodioxol-5-yl)-4-(hydroxymethyl)oxolan-3-yl](3,4-dimethoxyphenyl)methanol)