NP-MRD: Showing NP-Card for (2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid (NP0248098)

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Record Information

Version

2.0

Created at

2022-09-07 10:13:05 UTC

Updated at

2022-09-07 10:13:05 UTC

NP-MRD ID

NP0248098

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid

Description

P-Coumaroylputrescine belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring. P-Coumaroylputrescine is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. (2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid is found in Buxus natalensis, Colocasia esculenta and Solanum lycopersicum. (2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid was first documented in 2020 (PMID: 32323332). Based on a literature review a small amount of articles have been published on p-Coumaroylputrescine (PMID: 35601148) (PMID: 34822009) (PMID: 33308034) (PMID: 30920733).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 35 35  0  0  0  0  0  0  0  0999 V2000
    4.4363   -0.4737    1.4922 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.3901   -1.3730    0.3748 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2641   -1.0610   -0.5788 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4429    0.3307   -1.1102 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3202    0.6947   -2.0860 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0441    0.6276   -1.4360 N   0  0  0  0  0  0  0  0  0  0  0  0
    0.6904    1.3203   -0.4215 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5210    2.2409    0.1843 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6465    1.1339    0.1233 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4976    0.2697   -0.4045 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8462    0.0246    0.0781 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6244   -0.9097   -0.5738 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9149   -1.2084   -0.1873 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4495   -0.5435    0.8981 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7486   -0.8677    1.2595 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7126    0.3866    1.5687 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4264    0.6560    1.1502 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7296   -0.9254    2.3886 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9830    0.4068    1.2918 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2378   -2.4083    0.7934 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3640   -1.3112   -0.1530 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3260   -1.0682    0.0308 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2405   -1.8274   -1.3773 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4124    0.3721   -1.6287 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4672    1.0244   -0.2582 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5307    1.6604   -2.5801 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3196   -0.0983   -2.8812 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1438    3.0418    0.6624 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9902    1.7078    0.9928 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1110   -0.2756   -1.2650 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1878   -1.4337   -1.4380 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4604   -1.9534   -0.7499 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2197   -0.4386    2.0322 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1684    0.8888    2.4182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8598    1.3900    1.6878 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  7  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 14 16  1  0
 16 17  2  0
 17 11  1  0
  1 18  1  0
  1 19  1  0
  2 20  1  0
  2 21  1  0
  3 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
  5 26  1  0
  5 27  1  0
  8 28  1  0
  9 29  1  0
 10 30  1  0
 12 31  1  0
 13 32  1  0
 15 33  1  0
 16 34  1  0
 17 35  1  0
M  END


  Mrv1652309072212132D          

 17 17  0  0  0  0            999 V2000
   -1.4289   -4.9500    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -4.5375    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -5.7750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  6  5  1  4  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 11 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0248098

> <DATABASE_NAME>
NP-MRD

> <SMILES>
NCCCCN=C(O)\C=C\C1=CC=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C13H18N2O2/c14-9-1-2-10-15-13(17)8-5-11-3-6-12(16)7-4-11/h3-8,16H,1-2,9-10,14H2,(H,15,17)/b8-5+

> <INCHI_KEY>
CJHDBEPXEKGBDW-VMPITWQZSA-N

> <FORMULA>
C13H18N2O2

> <MOLECULAR_WEIGHT>
234.299

> <EXACT_MASS>
234.136827828

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
35

> <JCHEM_AVERAGE_POLARIZABILITY>
27.23568998392239

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2E)-N-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid

> <JCHEM_LOGP>
-0.44359337767200707

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
1

> <JCHEM_PKA>
9.436451590209042

> <JCHEM_PKA_STRONGEST_ACIDIC>
4.906389234133938

> <JCHEM_PKA_STRONGEST_BASIC>
10.286125625373069

> <JCHEM_POLAR_SURFACE_AREA>
78.84

> <JCHEM_REFRACTIVITY>
69.7412

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2E)-N-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  N   UNK     0      -2.667  -9.240   0.000  0.00  0.00           N+0
HETATM    2  C   UNK     0      -1.334  -8.470   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       0.000  -9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -8.470   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       2.667  -9.240   0.000  0.00  0.00           C+0
HETATM    6  N   UNK     0       4.001  -8.470   0.000  0.00  0.00           N+0
HETATM    7  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM    8  O   UNK     0       5.335 -10.780   0.000  0.00  0.00           O+0
HETATM    9  C   UNK     0       6.668  -8.470   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.668  -6.930   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.002  -6.160   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       8.002  -4.620   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       9.336  -3.850   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      10.669  -4.620   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      12.003  -3.850   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      10.669  -6.160   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.336  -6.930   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   11                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₃H₁₈N₂O₂

Average Mass

234.2990 Da

Monoisotopic Mass

234.13683 Da

IUPAC Name

(2E)-N-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid

Traditional Name

(2E)-N-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid

CAS Registry Number

Not Available

SMILES

NCCCCN=C(O)\C=C\C1=CC=C(O)C=C1

InChI Identifier

InChI=1S/C13H18N2O2/c14-9-1-2-10-15-13(17)8-5-11-3-6-12(16)7-4-11/h3-8,16H,1-2,9-10,14H2,(H,15,17)/b8-5+

InChI Key

CJHDBEPXEKGBDW-VMPITWQZSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Buxus natalensis	LOTUS Database	35616633
Colocasia esculenta	LOTUS Database	35616633
Solanum lycopersicum	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as coumaric acids and derivatives. These are aromatic compounds containing Aromatic compounds containing a cinnamic acid moiety (or a derivative thereof) hydroxylated at the C2 (ortho-), C3 (meta-), or C4 (para-) carbon atom of the benzene ring.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Hydroxycinnamic acids and derivatives

Direct Parent

Coumaric acids and derivatives

Alternative Parents

Substituents

Cinnamic acid amide
Coumaric acid or derivatives
Styrene
1-hydroxy-2-unsubstituted benzenoid
Phenol
Monocyclic benzene moiety
Benzenoid
Amino acid or derivatives
Carboxamide group
Secondary carboxylic acid amide
Carboxylic acid derivative
Organic oxide
Organooxygen compound
Organonitrogen compound
Primary aliphatic amine
Organopnictogen compound
Organic oxygen compound
Amine
Carbonyl group
Organic nitrogen compound
Primary amine
Hydrocarbon derivative
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

hydroxycinnamic acid (CHEBI:70431 )

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	-0.44	ChemAxon
pKa (Strongest Acidic)	4.91	ChemAxon
pKa (Strongest Basic)	10.29	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	78.84 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	69.74 m³·mol⁻¹	ChemAxon
Polarizability	27.24 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00053637

Chemspider ID

4943961

KEGG Compound ID

C18326

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6439562

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Wang H, Zhu J, Zhang L, Shen P, Xiao Z, Zhao R: Insights into the Major Metabolites Involved in the Underground Floral Differentiation of Erythronium japonicum. Biomed Res Int. 2022 May 13;2022:7431151. doi: 10.1155/2022/7431151. eCollection 2022. [PubMed:35601148 ]
Shinya T, Miyamoto K, Uchida K, Hojo Y, Yumoto E, Okada K, Yamane H, Galis I: Chitooligosaccharide elicitor and oxylipins synergistically elevate phytoalexin production in rice. Plant Mol Biol. 2022 Jul;109(4-5):595-609. doi: 10.1007/s11103-021-01217-w. Epub 2021 Nov 25. [PubMed:34822009 ]
Labib MM, Amin MK, Alzohairy AM, Elashtokhy MMA, Samir O, Hassanein SE: Inhibition analysis of aflatoxin by in silico targeting the thioesterase domain of polyketide synthase enzyme in Aspergillus ssp. J Biomol Struct Dyn. 2022 Jul;40(10):4328-4340. doi: 10.1080/07391102.2020.1856186. Epub 2020 Dec 11. [PubMed:33308034 ]
Andama JB, Mujiono K, Hojo Y, Shinya T, Galis I: Nonglandular silicified trichomes are essential for rice defense against chewing herbivores. Plant Cell Environ. 2020 Sep;43(9):2019-2032. doi: 10.1111/pce.13775. Epub 2020 May 6. [PubMed:32323332 ]
Valette M, Rey M, Gerin F, Comte G, Wisniewski-Dye F: A common metabolomic signature is observed upon inoculation of rice roots with various rhizobacteria. J Integr Plant Biol. 2020 Feb;62(2):228-246. doi: 10.1111/jipb.12810. Epub 2019 May 22. [PubMed:30920733 ]
LOTUS database [Link]

Showing NP-Card for (2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid (NP0248098)

MOL for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

3D MOL for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

3D SDF for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

3D-SDF for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

PDB for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

3D PDB for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

SMILES for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

INCHI for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

Structure for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)

3D Structure for NP0248098 ((2e)-n-(4-aminobutyl)-3-(4-hydroxyphenyl)prop-2-enimidic acid)