NP-MRD: Showing NP-Card for (3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one (NP0247906)

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Record Information

Version

2.0

Created at

2022-09-07 09:55:33 UTC

Updated at

2022-09-07 09:55:33 UTC

NP-MRD ID

NP0247906

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one

Description

Prechrysophanol belongs to the class of organic compounds known as anthracenes. These are organic compounds containing a system of three linearly fused benzene rings. (3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one was first documented in 2008 (PMID: 18776659). Based on a literature review very few articles have been published on Prechrysophanol.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 33 35  0  0  0  0  0  0  0  0999 V2000
   -2.8356   -1.1655   -1.0668 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9083   -0.2634    0.1245 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.1416   -0.4410    0.7505 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7882    1.2036   -0.2293 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4194    1.7137   -0.0114 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2220    2.9338    0.1156 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2522    0.8353    0.0654 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4671   -0.4106    0.6567 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5646   -1.2828    0.7839 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8020   -0.9184    0.3263 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8460   -1.8122    0.4630 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0934   -1.4987    0.0278 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3114   -0.2812   -0.5518 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2832    0.6505   -0.7088 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5744    1.8193   -1.2843 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0378    0.3102   -0.2629 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9818    1.2190   -0.4009 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1655    2.4263   -0.9728 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8495   -0.6924    1.1150 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8539   -1.3612   -1.5086 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1900   -0.7295   -1.8700 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3458   -2.1518   -0.8154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7634    0.2815    0.5097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4703    1.8368    0.3870 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1051    1.3496   -1.2984 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3742   -2.2461    1.2467 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6527   -2.7706    0.9246 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8826   -2.2470    0.1626 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3106   -0.0479   -0.8926 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2041    2.6410   -1.5508 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5046    3.1157   -1.1356 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9306   -1.7957    1.2134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0462   -0.2203    2.1128 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  1
  2  4  1  0
  4  5  1  0
  5  6  2  0
  5  7  1  0
  7  8  2  0
  8 19  1  0
  8  9  1  0
  9 10  2  0
 10 11  1  0
 11 12  2  0
 12 13  1  0
 13 14  2  0
 14 15  1  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 19  2  1  0
 16 10  1  0
 17  7  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  4 24  1  0
  4 25  1  0
 19 32  1  0
 19 33  1  0
  9 26  1  0
 11 27  1  0
 12 28  1  0
 13 29  1  0
 15 30  1  0
 18 31  1  0
M  END


  Mrv1652309072211552D          

 19 21  0  0  1  0            999 V2000
    5.0993    0.1433    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.5690   -0.7752    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  1  0  0  0
  2  3  1  6  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 16  1  0  0  0  0
 10 16  1  0  0  0  0
 16 17  2  0  0  0  0
  7 17  1  0  0  0  0
 17 18  1  0  0  0  0
  8 19  1  0  0  0  0
  2 19  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0247906

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@]1(O)CC(=O)C2=C(C1)C=C1C=CC=C(O)C1=C2O

> <INCHI_IDENTIFIER>
InChI=1S/C15H14O4/c1-15(19)6-9-5-8-3-2-4-10(16)12(8)14(18)13(9)11(17)7-15/h2-5,16,18-19H,6-7H2,1H3/t15-/m1/s1

> <INCHI_KEY>
HIYJWHVWXOVASR-OAHLLOKOSA-N

> <FORMULA>
C15H14O4

> <MOLECULAR_WEIGHT>
258.273

> <EXACT_MASS>
258.089208931

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
33

> <JCHEM_AVERAGE_POLARIZABILITY>
26.78057840654637

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3R)-3,8,9-trihydroxy-3-methyl-1,2,3,4-tetrahydroanthracen-1-one

> <JCHEM_LOGP>
2.363236383

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.364265101282673

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.848962095199426

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9317450027692384

> <JCHEM_POLAR_SURFACE_AREA>
77.76

> <JCHEM_REFRACTIVITY>
70.89240000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
0

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3R)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       9.519   0.267   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.002  -0.000   0.000  0.00  0.00           C+0
HETATM    3  O   UNK     0       8.529  -1.447   0.000  0.00  0.00           O+0
HETATM    4  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM    6  O   UNK     0       6.668   3.850   0.000  0.00  0.00           O+0
HETATM    7  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.335   0.000   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       2.667  -0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.000   0.000   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       1.334   3.850   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0       4.001   3.850   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0       6.668  -0.770   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3    4   19                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7                                                  
CONECT    6    5                                                            
CONECT    7    5    8   17                                                  
CONECT    8    7    9   19                                                  
CONECT    9    8   10                                                       
CONECT   10    9   11   16                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   10   17                                                  
CONECT   17   16    7   18                                                  
CONECT   18   17                                                            
CONECT   19    8    2                                                       
MASTER        0    0    0    0    0    0    0    0   19    0   42    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₁₄O₄

Average Mass

258.2730 Da

Monoisotopic Mass

258.08921 Da

IUPAC Name

(3R)-3,8,9-trihydroxy-3-methyl-1,2,3,4-tetrahydroanthracen-1-one

Traditional Name

(3R)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one

CAS Registry Number

Not Available

SMILES

C[C@]1(O)CC(=O)C2=C(C1)C=C1C=CC=C(O)C1=C2O

InChI Identifier

InChI=1S/C15H14O4/c1-15(19)6-9-5-8-3-2-4-10(16)12(8)14(18)13(9)11(17)7-15/h2-5,16,18-19H,6-7H2,1H3/t15-/m1/s1

InChI Key

HIYJWHVWXOVASR-OAHLLOKOSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Not Available

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as anthracenes. These are organic compounds containing a system of three linearly fused benzene rings.

Kingdom

Organic compounds

Super Class

Benzenoids

Class

Anthracenes

Sub Class

Not Available

Direct Parent

Anthracenes

Alternative Parents

Substituents

Anthracene
1-naphthol
Tetralin
Aryl alkyl ketone
Aryl ketone
1-hydroxy-2-unsubstituted benzenoid
1-hydroxy-4-unsubstituted benzenoid
Vinylogous acid
Tertiary alcohol
Ketone
Polyol
Organic oxide
Hydrocarbon derivative
Alcohol
Organooxygen compound
Organic oxygen compound
Aromatic homopolycyclic compound

Molecular Framework

Aromatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.36	ChemAxon
pKa (Strongest Acidic)	7.85	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	77.76 Å²	ChemAxon
Rotatable Bond Count	0	ChemAxon
Refractivity	70.89 m³·mol⁻¹	ChemAxon
Polarizability	26.78 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

102517601

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Fiedler HP, Dieter A, Gulder TA, Kajahn I, Hamm A, Brown R, Jones AL, Goodfellow M, Muller WE, Bringmann G: Genoketides A1 and A2, new octaketides and biosynthetic intermediates of chrysophanol produced by Streptomyces sp. AK 671. J Antibiot (Tokyo). 2008 Jul;61(7):464-73. doi: 10.1038/ja.2008.63. [PubMed:18776659 ]
LOTUS database [Link]

Showing NP-Card for (3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one (NP0247906)

MOL for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

3D MOL for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

3D SDF for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

3D-SDF for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

PDB for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

3D PDB for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

SMILES for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

INCHI for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

Structure for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)

3D Structure for NP0247906 ((3r)-3,8,9-trihydroxy-3-methyl-2,4-dihydroanthracen-1-one)