NP-MRD: Showing NP-Card for methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate (NP0246916)

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Record Information

Version

2.0

Created at

2022-09-07 08:32:18 UTC

Updated at

2022-09-07 08:32:18 UTC

NP-MRD ID

NP0246916

Secondary Accession Numbers

None

Natural Product Identification

Common Name

methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate

Description

3'-O-beta-D-Glucopyranosyl plumbagic acid methyl ester belongs to the class of organic compounds known as saccharolipids. Saccharolipids are compounds in which fatty acids are linked directly to a sugar backbone, forming structures that are compatible with membrane bilayers. In the saccharolipids, a sugar substitutes for the glycerol backbone that is present in glycerolipids and glycerophospholipids. The most familiar saccharolipids contain an acylated glucosamine. In contrast to others glycolipids, the fatty acid is not glycosidically linked to the sugar moiety. methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate is found in Plumbago zeylanica. Based on a literature review very few articles have been published on 3'-O-beta-D-Glucopyranosyl plumbagic acid methyl ester.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072210322D          

 28 29  0  0  1  0            999 V2000
    2.8579   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -7.4250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -6.6000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7158   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -6.6000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.7171   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -6.6000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.1460   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -7.4250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.1460   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -7.8375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.7171   -8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -7.4250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.2881   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  1  0  0  0
 14 27  2  0  0  0  0
 10 27  1  0  0  0  0
 27 28  1  0  0  0  0
M  END

     RDKit          3D

 52 53  0  0  0  0  0  0  0  0999 V2000
    7.2716    0.8366    1.8934 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8987    0.3746    0.6139 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.9072    0.9965   -0.1336 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3739    1.9940    0.4157 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4641    0.5898   -1.4498 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3402   -0.3959   -1.5288 C   0  0  1  0  0  0  0  0  0  0  0  0
    4.6617   -1.6976   -0.8388 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0576    0.1199   -1.0306 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0853    1.2984   -0.5347 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.7978   -0.5778   -1.0508 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6668   -1.8287   -1.5925 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4297   -2.4882   -1.6198 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6962   -1.8575   -1.0835 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5816   -0.6147   -0.5424 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6063    0.0785   -0.0003 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9517   -0.2759    0.1352 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.6938    0.7103   -0.5106 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0471    0.5178   -0.4431 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.7108    1.8084   -0.9364 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3335    2.8876   -0.1283 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5457    0.2618    0.9613 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.0108   -1.0423    1.1225 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4635    0.4916    1.9898 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0911    1.8209    2.0955 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2486   -0.3114    1.6224 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4437   -1.6429    2.0328 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6733    0.0215   -0.5295 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7907    1.3079    0.0310 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.5993   -0.0338    2.4816 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0854    1.5760    1.7488 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3840    1.2784    2.4060 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1078    1.5099   -2.0019 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3494    0.2565   -2.0348 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2169   -0.6443   -2.6164 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5623   -1.5245   -0.1807 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7882   -2.5576   -1.4899 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8525   -1.9128   -0.1195 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5081   -2.3165   -2.0128 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3095   -3.4689   -2.0402 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6597   -2.3417   -1.0913 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1218   -1.2764   -0.2833 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4289   -0.2958   -1.0840 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3819    2.0585   -1.9660 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8097    1.7158   -0.9583 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0464    3.5378    0.0003 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3914    0.9358    1.2323 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7144   -1.5656    0.3388 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8437    0.0889    2.9613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1032    1.9477    1.9902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4054    0.0704    2.2345 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8375   -2.1852    1.4655 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0138    1.7644    0.4166 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  3  5  1  0
  5  6  1  0
  6  7  1  0
  6  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  2  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  1  0
 18 21  1  0
 21 22  1  0
 21 23  1  0
 23 24  1  0
 23 25  1  0
 25 26  1  0
 14 27  2  0
 27 28  1  0
 27 10  1  0
 25 16  1  0
  1 29  1  0
  1 30  1  0
  1 31  1  0
  5 32  1  0
  5 33  1  0
  6 34  1  6
  7 35  1  0
  7 36  1  0
  7 37  1  0
 11 38  1  0
 12 39  1  0
 13 40  1  0
 16 41  1  6
 18 42  1  6
 19 43  1  0
 19 44  1  0
 20 45  1  0
 21 46  1  1
 22 47  1  0
 23 48  1  1
 24 49  1  0
 25 50  1  1
 26 51  1  0
 28 52  1  0
M  END


  Mrv1652309072210322D          

 28 29  0  0  1  0            999 V2000
    2.8579   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -7.4250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -6.6000    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.7158   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -7.8375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -7.4250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -6.6000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.7171   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -6.6000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   12.1460   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1460   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.4315   -7.4250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   12.1460   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.7171   -7.8375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   10.7171   -8.6625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.0026   -7.4250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    9.2881   -7.8375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -5.3625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  6  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 16 15  1  6  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  6  0  0  0
 19 20  1  0  0  0  0
 18 21  1  0  0  0  0
 21 22  1  1  0  0  0
 21 23  1  0  0  0  0
 23 24  1  6  0  0  0
 23 25  1  0  0  0  0
 16 25  1  0  0  0  0
 25 26  1  1  0  0  0
 14 27  2  0  0  0  0
 10 27  1  0  0  0  0
 27 28  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0246916

> <DATABASE_NAME>
NP-MRD

> <SMILES>
COC(=O)C[C@@H](C)C(=O)C1=CC=CC(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)=C1O

> <INCHI_IDENTIFIER>
InChI=1S/C18H24O10/c1-8(6-12(20)26-2)13(21)9-4-3-5-10(14(9)22)27-18-17(25)16(24)15(23)11(7-19)28-18/h3-5,8,11,15-19,22-25H,6-7H2,1-2H3/t8-,11-,15-,16+,17-,18-/m1/s1

> <INCHI_KEY>
ZVFWDSLLUZMSDS-UCJGRUORSA-N

> <FORMULA>
C18H24O10

> <MOLECULAR_WEIGHT>
400.38

> <EXACT_MASS>
400.136946973

> <JCHEM_ACCEPTOR_COUNT>
9

> <JCHEM_ATOM_COUNT>
52

> <JCHEM_AVERAGE_POLARIZABILITY>
38.40969961367175

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
methyl (3R)-4-(2-hydroxy-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate

> <JCHEM_LOGP>
-0.18056232066666686

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.197776958075638

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.502652862817074

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9810923549123682

> <JCHEM_POLAR_SURFACE_AREA>
162.98000000000002

> <JCHEM_REFRACTIVITY>
92.80390000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
methyl (3R)-4-(2-hydroxy-3-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       5.335 -12.320   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0       6.668 -11.550   0.000  0.00  0.00           O+0
HETATM    3  C   UNK     0       8.002 -12.320   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       8.002 -13.860   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       9.336 -11.550   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      10.669 -12.320   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.669 -13.860   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.003 -11.550   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      12.003 -10.010   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      13.337 -12.320   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.337 -13.860   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.670 -14.630   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      16.004 -13.860   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      16.004 -12.320   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      17.338 -11.550   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      18.672 -12.320   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0      20.005 -11.550   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0      21.339 -12.320   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      22.673 -11.550   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0      22.673 -10.010   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0      21.339 -13.860   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      22.673 -14.630   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0      20.005 -14.630   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      20.005 -16.170   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0      18.672 -13.860   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      17.338 -14.630   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      14.670 -11.550   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0      14.670 -10.010   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   27                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   27                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17   25                                                  
CONECT   17   16   18                                                       
CONECT   18   17   19   21                                                  
CONECT   19   18   20                                                       
CONECT   20   19                                                            
CONECT   21   18   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24   25                                                  
CONECT   24   23                                                            
CONECT   25   23   16   26                                                  
CONECT   26   25                                                            
CONECT   27   14   10   28                                                  
CONECT   28   27                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   58    0
END

View in JSmol

Synonyms

Value	Source
3'-O-b-D-Glucopyranosyl plumbagate methyl ester	Generator
3'-O-b-D-Glucopyranosyl plumbagic acid methyl ester	Generator
3'-O-beta-D-Glucopyranosyl plumbagate methyl ester	Generator
3'-O-Β-D-glucopyranosyl plumbagate methyl ester	Generator
3'-O-Β-D-glucopyranosyl plumbagic acid methyl ester	Generator

Chemical Formula

C₁₈H₂₄O₁₀

Average Mass

400.3800 Da

Monoisotopic Mass

400.13695 Da

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

COC(=O)C[C@@H](C)C(=O)C1=CC=CC(O[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)=C1O

InChI Identifier

InChI=1S/C18H24O10/c1-8(6-12(20)26-2)13(21)9-4-3-5-10(14(9)22)27-18-17(25)16(24)15(23)11(7-19)28-18/h3-5,8,11,15-19,22-25H,6-7H2,1-2H3/t8-,11-,15-,16+,17-,18-/m1/s1

InChI Key

ZVFWDSLLUZMSDS-UCJGRUORSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Plumbago zeylanica	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as saccharolipids. Saccharolipids are compounds in which fatty acids are linked directly to a sugar backbone, forming structures that are compatible with membrane bilayers. In the saccharolipids, a sugar substitutes for the glycerol backbone that is present in glycerolipids and glycerophospholipids. The most familiar saccharolipids contain an acylated glucosamine. In contrast to others glycolipids, the fatty acid is not glycosidically linked to the sugar moiety.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Saccharolipids

Sub Class

Not Available

Direct Parent

Saccharolipids

Alternative Parents

Substituents

Saccharolipid
Phenolic glycoside
Alkyl-phenylketone
Hexose monosaccharide
Butyrophenone
Glycosyl compound
O-glycosyl compound
Phenylketone
Phenylpropane
Phenoxy compound
Benzoyl
Gamma-keto acid
Phenol ether
Aryl alkyl ketone
Aryl ketone
1-hydroxy-4-unsubstituted benzenoid
Fatty acid ester
Phenol
Fatty acid methyl ester
Benzenoid
Monocyclic benzene moiety
Oxane
Fatty acyl
Monosaccharide
Keto acid
Vinylogous acid
Methyl ester
Carboxylic acid ester
Secondary alcohol
Ketone
Monocarboxylic acid or derivatives
Oxacycle
Organoheterocyclic compound
Acetal
Carboxylic acid derivative
Polyol
Primary alcohol
Alcohol
Carbonyl group
Organic oxygen compound
Organic oxide
Hydrocarbon derivative
Organooxygen compound
Aldehyde
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

4884741

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6325261

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate (NP0246916)

MOL for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

3D MOL for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

3D SDF for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

3D-SDF for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

PDB for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

3D PDB for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

SMILES for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

INCHI for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

Structure for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)

3D Structure for NP0246916 (methyl (3r)-4-(2-hydroxy-3-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}phenyl)-3-methyl-4-oxobutanoate)