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Showing NP-Card for dec-3-yn-2-ol (NP0246842)

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Record Information
Version2.0
Created at2022-09-07 08:26:07 UTC
Updated at2022-09-07 08:26:07 UTC
NP-MRD IDNP0246842
Secondary Accession NumbersNone
Natural Product Identification
Common Namedec-3-yn-2-ol
Description3-Decyn-2-ol belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms. dec-3-yn-2-ol was first documented in 2022 (PMID: 35531239). Based on a literature review very few articles have been published on 3-Decyn-2-ol.
Structure
Thumb
MOL3D MOLSDFPDBSMILESInChI

MOL for NP0246842 (dec-3-yn-2-ol)


  Mrv1652309072210262D          

 11 10  0  0  0  0            999 V2000
    1.7605   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763   -2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1908   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763   -3.4914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  3  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
M  END
Download

3D MOL for NP0246842 (dec-3-yn-2-ol)

     RDKit          3D

 29 28  0  0  0  0  0  0  0  0999 V2000
    4.0809    0.5357    0.1296 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1646   -0.6455    0.2597 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8538   -0.3159    0.9062 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0682    0.7166    0.1515 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7377    0.2915   -1.2424 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0912   -0.9798   -1.2144 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3372   -0.7550   -0.4806 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3743   -0.5601    0.1100 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6489   -0.3100    0.8140 C   0  0  1  0  0  0  0  0  0  0  0  0
   -4.1821    1.0587    0.4467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6198   -1.2482    0.3952 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1234    0.1263    0.0183 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0779    1.1910    1.0146 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8951    1.1057   -0.8157 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9988   -1.0665   -0.7646 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6399   -1.4566    0.8479 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0640    0.0622    1.9331 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2568   -1.2408    0.9615 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5447    1.7152    0.1596 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0918    0.8361    0.6957 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0527    1.0804   -1.6664 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6149    0.2004   -1.9003 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4434   -1.8441   -0.8058 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3006   -1.2182   -2.2977 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4762   -0.4081    1.8967 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4151    1.5826   -0.1827 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1023    0.9951   -0.1796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4510    1.6631    1.3447 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7097   -1.1117   -0.5818 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  3  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
  1 12  1  0
  1 13  1  0
  1 14  1  0
  2 15  1  0
  2 16  1  0
  3 17  1  0
  3 18  1  0
  4 19  1  0
  4 20  1  0
  5 21  1  0
  5 22  1  0
  6 23  1  0
  6 24  1  0
  9 25  1  1
 10 26  1  0
 10 27  1  0
 10 28  1  0
 11 29  1  0
M  END
Download

3D SDF for NP0246842 (dec-3-yn-2-ol)


  Mrv1652309072210262D          

 11 10  0  0  0  0            999 V2000
    1.7605   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4750   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1895   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9039   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6184   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3329   -1.4289    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0474   -1.8414    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7618   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763   -2.6664    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1908   -2.2539    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4763   -3.4914    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  3  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
  9 11  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0246842

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCC#CC(C)O

> <INCHI_IDENTIFIER>
InChI=1S/C10H18O/c1-3-4-5-6-7-8-9-10(2)11/h10-11H,3-7H2,1-2H3

> <INCHI_KEY>
PGIQIBRWODQISW-UHFFFAOYSA-N

> <FORMULA>
C10H18O

> <MOLECULAR_WEIGHT>
154.253

> <EXACT_MASS>
154.1357652

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
20.186025399307315

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
dec-3-yn-2-ol

> <JCHEM_LOGP>
3.185354420333333

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.383192112375937

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0685917700467646

> <JCHEM_POLAR_SURFACE_AREA>
20.23

> <JCHEM_REFRACTIVITY>
48.766099999999994

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
dec-3-yn-2-ol

> <JCHEM_VEBER_RULE>
1

$$$$
Download

3D-SDF for NP0246842 (dec-3-yn-2-ol)

Download
PDB for NP0246842 (dec-3-yn-2-ol)
HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       3.286  -3.437   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.620  -2.667   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.954  -3.437   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.287  -2.667   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.621  -3.437   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.955  -2.667   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      11.288  -3.437   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      12.622  -4.207   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      13.956  -4.977   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      15.289  -4.207   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0      13.956  -6.517   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9                                                            
MASTER        0    0    0    0    0    0    0    0   11    0   20    0
END

Download
3D PDB for NP0246842 (dec-3-yn-2-ol)
Download
SMILES for NP0246842 (dec-3-yn-2-ol)
CCCCCCC#CC(C)O
Download
INCHI for NP0246842 (dec-3-yn-2-ol)
InChI=1S/C10H18O/c1-3-4-5-6-7-8-9-10(2)11/h10-11H,3-7H2,1-2H3
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View in JSmol
SynonymsNot Available
Chemical FormulaC10H18O
Average Mass154.2530 Da
Monoisotopic Mass154.13577 Da
IUPAC Namedec-3-yn-2-ol
Traditional Namedec-3-yn-2-ol
CAS Registry NumberNot Available
SMILES
CCCCCCC#CC(C)O
InChI Identifier
InChI=1S/C10H18O/c1-3-4-5-6-7-8-9-10(2)11/h10-11H,3-7H2,1-2H3
InChI KeyPGIQIBRWODQISW-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of OriginNot Available
Chemical Taxonomy
Description Belongs to the class of organic compounds known as fatty alcohols. These are aliphatic alcohols consisting of a chain of a least six carbon atoms.
KingdomOrganic compounds  
Super ClassLipids and lipid-like molecules  
ClassFatty Acyls  
Sub ClassFatty alcohols  
Direct ParentFatty alcohols  
Alternative Parents
Substituents
  • Fatty alcohol
    • 

  • Secondary alcohol
    • 

  • Organic oxygen compound
    • 

  • Hydrocarbon derivative
    • 

  • Organooxygen compound
    • 

  • Alcohol
    • 

  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP3.19ChemAxon
pKa (Strongest Acidic)14.38ChemAxon
pKa (Strongest Basic)-3.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count1ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area20.23 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity48.77 m³·mol⁻¹ChemAxon
Polarizability20.19 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID467308  
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound536504  
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Perveen K, Bukhari NA, Al Masoudi LM, Alqahtani AN, Alruways MW, Alkhattaf FS: Antifungal potential, chemical composition of Chlorella vulgaris and SEM analysis of morphological changes in Fusarium oxysporum. Saudi J Biol Sci. 2022 Apr;29(4):2501-2505. doi: 10.1016/j.sjbs.2021.12.033. Epub  2021 Dec 20. [PubMed:35531239  ] 
  2. LOTUS database [Link]