NP-MRD: Showing NP-Card for (3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one (NP0246730)

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Record Information

Version

2.0

Created at

2022-09-07 08:17:33 UTC

Updated at

2022-09-07 08:17:33 UTC

NP-MRD ID

NP0246730

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one

Description

Senkyunolide F belongs to the class of organic compounds known as isobenzofurans. These are organic aromatic compounds containing an isobenzofuran moiety. (3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one is found in Angelica acutiloba, Angelica sinensis, Cnidium officinale, Ligusticum chuanxiong and Ligusticum sinense. (3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one was first documented in 2003 (PMID: 12802727). Based on a literature review a small amount of articles have been published on Senkyunolide F (PMID: 28879727) (PMID: 26829520) (PMID: 21880453) (PMID: 17972581).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 29 30  0  0  0  0  0  0  0  0999 V2000
   -4.4397    0.5293   -0.0815 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9233    0.5710    0.1224 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3451   -0.6268   -0.4914 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.9010   -1.7617    0.1394 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9030   -0.7745   -0.4876 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0290    0.0977    0.0104 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4121    1.2700    0.5934 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7316    1.9378    1.0009 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7989    3.0379    1.5718 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.8426    1.0787    0.6196 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4424   -0.0153    0.0337 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2956   -1.0936   -0.4727 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7571   -0.9367   -0.3181 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1291    0.3068    0.3442 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3012    1.2250    0.7737 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8854    1.5419    0.1055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9000   -0.2361    0.5716 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6930    0.2867   -1.1357 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7564    0.5477    1.2398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5861    1.5366   -0.2220 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6960   -0.7090   -1.5611 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7174   -2.5764   -0.4012 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4711   -1.6657   -0.9230 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0926   -1.2872   -1.5802 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9353   -2.0771   -0.0220 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2195   -0.9938   -1.3625 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2378   -1.8304    0.1765 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1977    0.4995    0.5014 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6772    2.1177    1.2548 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  3  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
 10 11  2  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  2  0
 11  6  1  0
 15 10  1  0
  1 16  1  0
  1 17  1  0
  1 18  1  0
  2 19  1  0
  2 20  1  0
  3 21  1  6
  4 22  1  0
  5 23  1  0
 12 24  1  0
 12 25  1  0
 13 26  1  0
 13 27  1  0
 14 28  1  0
 15 29  1  0
M  END


  Mrv1652309072210172D          

 15 16  0  0  0  0            999 V2000
   -2.2673    1.8818    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4604    1.7103    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2054    0.9256    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7575    0.3126    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3984    0.7541    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -0.0305    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6284   -0.6979    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1435   -1.3654    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3984   -2.1500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6411   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556    0.1271    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701   -0.2854    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0701   -1.1104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3556   -1.5229    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
  8 10  1  0  0  0  0
 10 11  2  0  0  0  0
  6 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 10 15  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0246730

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCC(O)\C=C1/OC(=O)C2=C1CCC=C2

> <INCHI_IDENTIFIER>
InChI=1S/C12H14O3/c1-2-8(13)7-11-9-5-3-4-6-10(9)12(14)15-11/h4,6-8,13H,2-3,5H2,1H3/b11-7-

> <INCHI_KEY>
XKAWDGBGOZLBRY-XFFZJAGNSA-N

> <FORMULA>
C12H14O3

> <MOLECULAR_WEIGHT>
206.241

> <EXACT_MASS>
206.094294311

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_ATOM_COUNT>
29

> <JCHEM_AVERAGE_POLARIZABILITY>
22.327346580241628

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3Z)-3-(2-hydroxybutylidene)-1,3,4,5-tetrahydro-2-benzofuran-1-one

> <JCHEM_LOGP>
1.5041842

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.775293261295296

> <JCHEM_PKA_STRONGEST_BASIC>
-2.8970867275094374

> <JCHEM_POLAR_SURFACE_AREA>
46.53

> <JCHEM_REFRACTIVITY>
59.5566

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3Z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0      -4.232   3.513   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.726   3.192   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -2.250   1.728   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0      -3.281   0.583   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0      -0.744   1.408   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -0.268  -0.057   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -1.173  -1.303   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -0.268  -2.549   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -0.744  -4.013   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0       1.197  -2.073   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       1.197  -0.533   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.530   0.237   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.864  -0.533   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.864  -2.073   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       2.530  -2.843   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6                                                       
CONECT    6    5    7   11                                                  
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11   15                                                  
CONECT   11   10    6   12                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   10                                                       
MASTER        0    0    0    0    0    0    0    0   15    0   32    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₂H₁₄O₃

Average Mass

206.2410 Da

Monoisotopic Mass

206.09429 Da

IUPAC Name

(3Z)-3-(2-hydroxybutylidene)-1,3,4,5-tetrahydro-2-benzofuran-1-one

Traditional Name

(3Z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one

CAS Registry Number

Not Available

SMILES

CCC(O)\C=C1/OC(=O)C2=C1CCC=C2

InChI Identifier

InChI=1S/C12H14O3/c1-2-8(13)7-11-9-5-3-4-6-10(9)12(14)15-11/h4,6-8,13H,2-3,5H2,1H3/b11-7-

InChI Key

XKAWDGBGOZLBRY-XFFZJAGNSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Angelica acutiloba	LOTUS Database	35616633
Angelica sinensis	LOTUS Database	35616633
Cnidium officinale	LOTUS Database	35616633
Ligusticum chuanxiong	LOTUS Database	35616633
Ligusticum sinense	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isobenzofurans. These are organic aromatic compounds containing an isobenzofuran moiety.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Isobenzofurans

Sub Class

Not Available

Direct Parent

Isobenzofurans

Alternative Parents

Substituents

Isobenzofuran
2-furanone
Dihydrofuran
Enol ester
Alpha,beta-unsaturated carboxylic ester
Enoate ester
Carboxylic acid ester
Secondary alcohol
Lactone
Carboxylic acid derivative
Oxacycle
Monocarboxylic acid or derivatives
Hydrocarbon derivative
Organic oxide
Alcohol
Carbonyl group
Organooxygen compound
Organic oxygen compound
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.5	ChemAxon
pKa (Strongest Acidic)	14.78	ChemAxon
pKa (Strongest Basic)	-2.9	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	2	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	46.53 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	59.56 m³·mol⁻¹	ChemAxon
Polarizability	22.33 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00054188

Chemspider ID

9416233

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

11241196

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Liu Y, Luo ZQ, Lv BR, Zhao HY, Dong L: [Absorption and metabolism of Chuanxiong Rhizoma decoction with multi-component sequential metabolism method]. Zhongguo Zhong Yao Za Zhi. 2016 Apr;41(7):1178-1182. doi: 10.4268/cjcmm20160703. [PubMed:28879727 ]
Wang L, Huang S, Chen B, Zang XY, Su D, Liang J, Xu F, Liu GX, Shang MY, Cai SQ: Characterization of the Anticoagulative Constituents of Angelicae Sinensis Radix and Their Metabolites in Rats by HPLC-DAD-ESI-IT-TOF-MSn. Planta Med. 2016 Mar;82(4):362-70. doi: 10.1055/s-0035-1558309. Epub 2016 Feb 1. [PubMed:26829520 ]
Zuo A, Wang L, Xiao H, Li L, Liu Y, Yi J: Identification of the absorbed components and metabolites in rat plasma after oral administration of Rhizoma Chuanxiong decoction by HPLC-ESI-MS/MS. J Pharm Biomed Anal. 2011 Dec 15;56(5):1046-56. doi: 10.1016/j.jpba.2011.08.010. Epub 2011 Aug 10. [PubMed:21880453 ]
Chang XL, Ma YB, Zhang XM, Jiang ZY, Chen JJ: [Studies on chemical constituents of rhizomes of Ligusticum chuanxiong]. Zhongguo Zhong Yao Za Zhi. 2007 Aug;32(15):1533-6. [PubMed:17972581 ]
Li SL, Chan SS, Lin G, Ling L, Yan R, Chung HS, Tam YK: Simultaneous analysis of seventeen chemical ingredients of Ligusticum chuanxiong by on-line high performance liquid chromatography-diode array detector-mass spectrometry. Planta Med. 2003 May;69(5):445-51. doi: 10.1055/s-2003-39709. [PubMed:12802727 ]
LOTUS database [Link]

Showing NP-Card for (3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one (NP0246730)

MOL for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

3D MOL for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

3D SDF for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

3D-SDF for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

PDB for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

3D PDB for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

SMILES for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

INCHI for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

Structure for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)

3D Structure for NP0246730 ((3z)-3-(2-hydroxybutylidene)-4,5-dihydro-2-benzofuran-1-one)