Np mrd loader

Record Information
Version2.0
Created at2022-09-07 06:37:11 UTC
Updated at2022-09-07 06:37:11 UTC
NP-MRD IDNP0245511
Secondary Accession NumbersNone
Natural Product Identification
Common Namen-(2-oxooxolan-3-yl)dodecanimidic acid
DescriptionN-Dodecanoyl-DL-homoserine lactone, also known as N-dodecanoyl-DL-HSL, belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. n-(2-oxooxolan-3-yl)dodecanimidic acid is found in Cronobacter sakazakii. n-(2-oxooxolan-3-yl)dodecanimidic acid was first documented in 2018 (PMID: 28858750). Based on a literature review a small amount of articles have been published on N-Dodecanoyl-DL-homoserine lactone (PMID: 35689970) (PMID: 32849316) (PMID: 31174122) (PMID: 30502702).
Structure
Thumb
Synonyms
ValueSource
N-Dodecanoyl-DL-HSLMeSH
Chemical FormulaC16H29NO3
Average Mass283.4120 Da
Monoisotopic Mass283.21474 Da
IUPAC NameN-(2-oxooxolan-3-yl)dodecanimidic acid
Traditional NameN-(2-oxooxolan-3-yl)dodecanimidic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCC(O)=NC1CCOC1=O
InChI Identifier
InChI=1S/C16H29NO3/c1-2-3-4-5-6-7-8-9-10-11-15(18)17-14-12-13-20-16(14)19/h14H,2-13H2,1H3,(H,17,18)
InChI KeyWILLZMOKUUPJSL-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Cronobacter sakazakiiLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-acyl-alpha amino acids and derivatives. N-acyl-alpha amino acids and derivatives are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentN-acyl-alpha amino acids and derivatives
Alternative Parents
Substituents
  • Alpha-amino acid ester
  • N-acyl-alpha amino acid or derivatives
  • Acyl-homoserine lactone
  • Fatty amide
  • Gamma butyrolactone
  • Fatty acyl
  • N-acyl-amine
  • Oxolane
  • Carboxamide group
  • Carboxylic acid ester
  • Lactone
  • Secondary carboxylic acid amide
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Organopnictogen compound
  • Carbonyl group
  • Organic oxygen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP4.44ChemAxon
pKa (Strongest Acidic)5.96ChemAxon
pKa (Strongest Basic)1.55ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area58.89 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity79.42 m³·mol⁻¹ChemAxon
Polarizability34.11 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDHMDB0341351
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID9740197
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound11565426
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. Cabo ML, Rodriguez A, Herrera JR: Exploring communication signals inside the microbial community of a Listeria monocytogenes-carrying biofilm contamination site. Int J Food Microbiol. 2022 Sep 2;376:109773. doi: 10.1016/j.ijfoodmicro.2022.109773. Epub 2022 Jun 4. [PubMed:35689970 ]
  2. Carneiro DG, Almeida FA, Aguilar AP, Vieira NM, Pinto UM, Mendes TAO, Vanetti MCD: Salmonella enterica Optimizes Metabolism After Addition of Acyl-Homoserine Lactone Under Anaerobic Conditions. Front Microbiol. 2020 Jul 28;11:1459. doi: 10.3389/fmicb.2020.01459. eCollection 2020. [PubMed:32849316 ]
  3. Wang J, Liu Q, Wu B, Zhao F, Ma S, Hu H, Zhang X, Ren H: Quorum sensing signaling distribution during the development of full-scale municipal wastewater treatment biofilms. Sci Total Environ. 2019 Oct 1;685:28-36. doi: 10.1016/j.scitotenv.2019.05.249. Epub 2019 May 21. [PubMed:31174122 ]
  4. Zhang J, Li J, Zhao BH, Zhang YC, Wang XJ, Chen GH: Long-term effects of N-acyl-homoserine lactone-based quorum sensing on the characteristics of ANAMMOX granules in high-loaded reactors. Chemosphere. 2019 Mar;218:632-642. doi: 10.1016/j.chemosphere.2018.11.170. Epub 2018 Nov 26. [PubMed:30502702 ]
  5. Wang J, Ding L, Li K, Huang H, Hu H, Geng J, Xu K, Ren H: Estimation of spatial distribution of quorum sensing signaling in sequencing batch biofilm reactor (SBBR) biofilms. Sci Total Environ. 2018 Jan 15;612:405-414. doi: 10.1016/j.scitotenv.2017.07.277. Epub 2017 Sep 1. [PubMed:28858750 ]
  6. LOTUS database [Link]