NP-MRD: Showing NP-Card for (2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate (NP0245108)

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Record Information

Version

1.0

Created at

2022-09-07 06:04:16 UTC

Updated at

2022-09-07 06:04:16 UTC

NP-MRD ID

NP0245108

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate

Description

Rabdoshikoccin B belongs to the class of organic compounds known as cyclic alcohols and derivatives. These are organic compounds containing an aliphatic ring substituted with at least one hydroxyl group. (2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate is found in Isodon shikokianus. It was first documented in 2022 (PMID: 36088043). Based on a literature review a significant number of articles have been published on Rabdoshikoccin B (PMID: 36087927) (PMID: 36087886) (PMID: 36087866) (PMID: 36087840).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072208042D          

 28 30  0  0  1  0            999 V2000
    5.0900    0.8890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3775    1.3049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3101    2.1272    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9356    2.6650    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5072    2.3171    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0785    1.6123    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4746    0.8885    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0458    0.1837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9793    0.4557    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0781    1.1681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7584    1.1982    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2537    1.6311    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5832    1.1794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8250    0.9263    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2210    0.2026    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0002    0.9452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6042    1.6689    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2206    1.6877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6494    0.9829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2533    0.2592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4741    1.0018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0329    2.3737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2643    2.6735    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1947    3.1827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8577    2.3548    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2864    3.0597    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1112    3.0408    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5399    3.7457    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  6  1  6  0  0  0
  2  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
 17 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 22 25  1  0  0  0  0
 12 25  1  0  0  0  0
 25 26  1  1  0  0  0
 26 27  1  0  0  0  0
  5 27  1  0  0  0  0
 27 28  1  1  0  0  0
M  END

     RDKit          3D

 58 60  0  0  0  0  0  0  0  0999 V2000
    6.3929    1.3442   -0.3030 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1638    0.9667   -0.1266 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9159    1.6575   -0.4929 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7490    2.4305   -1.4655 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9361    1.2130    0.5607 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5588    0.4093    1.3738 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5822   -0.2833    0.4930 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.7957   -1.0602   -0.5327 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4869   -1.6069   -0.0062 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3381   -1.0958   -0.7759 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5889   -0.5824   -1.8689 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0878   -1.1475   -0.3470 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1878   -2.1686    0.7384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9581   -1.5770   -1.5009 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.3768   -2.9157   -1.3121 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1507   -0.6926   -1.7239 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8487   -0.3457   -0.4391 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.0998    0.2085   -0.5867 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2957   -0.3043   -0.1486 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6110    0.3605   -0.3495 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2376   -1.4038    0.4549 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8947    0.4759    0.3843 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2234    0.2011    1.8396 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2342    1.9608    0.1706 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4668    0.2470    0.0360 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4636    0.8491    1.0709 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5352    1.7013    0.5326 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5930    2.9618    1.1866 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.6494    2.2735   -0.7654 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1780    0.6697    0.0421 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5823    0.1141    2.4178 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3198   -0.8595    1.0225 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6330   -0.4056   -1.4257 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4733   -1.8943   -0.8658 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.4709   -1.4380    1.0659 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5044   -2.7150   -0.1466 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0028   -1.7926    1.7507 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1514   -2.7211    0.6860 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5759   -2.9909    0.5845 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3239   -1.6064   -2.4107 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3415   -2.9798   -1.1750 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8327    0.1687   -2.3134 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8759   -1.2705   -2.3428 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9999   -1.3048    0.1133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0012    0.7621    0.6245 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4837    1.2480   -1.0097 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3800   -0.3451   -0.7280 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3570    0.0429    2.4751 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8608   -0.7240    1.9481 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8313    1.0077    2.3056 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9288    2.3367    0.9186 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2744    2.5033    0.2902 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5542    2.1324   -0.8776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2598    0.8519   -0.9011 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7979    0.0848    1.8115 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1921    1.5222    1.7073 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1911    1.9894   -0.5080 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8431    3.5364    0.9231 H   0  0  0  0  0  0  0  0  0  0  0  0
 20 19  1  0
 19 21  2  0
 19 18  1  0
 18 17  1  0
 17 16  1  0
 16 14  1  0
 14 15  1  0
 14 12  1  0
 12 13  1  1
 12 25  1  0
 25 26  1  0
 26 27  1  0
 27 28  1  0
 27  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  2  0
  7  2  1  0
  2  1  2  3
  2  3  1  0
  3  4  2  0
 25 22  1  0
 22 23  1  0
 22 24  1  0
 22 17  1  0
 10 12  1  0
  3  5  1  0
 20 45  1  0
 20 46  1  0
 20 47  1  0
 17 44  1  1
 16 42  1  0
 16 43  1  0
 14 40  1  6
 15 41  1  0
 13 37  1  0
 13 38  1  0
 13 39  1  0
 25 54  1  6
 26 55  1  0
 26 56  1  0
 27 57  1  6
 28 58  1  0
  6 31  1  0
  7 32  1  1
  8 33  1  0
  8 34  1  0
  9 35  1  0
  9 36  1  0
  1 29  1  0
  1 30  1  0
 23 48  1  0
 23 49  1  0
 23 50  1  0
 24 51  1  0
 24 52  1  0
 24 53  1  0
M  END


  Mrv1652309072208042D          

 28 30  0  0  1  0            999 V2000
    5.0900    0.8890    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3775    1.3049    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3101    2.1272    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9356    2.6650    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5072    2.3171    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0785    1.6123    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4746    0.8885    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0458    0.1837    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9793    0.4557    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0781    1.1681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7584    1.1982    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.2537    1.6311    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.5832    1.1794    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8250    0.9263    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2210    0.2026    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0002    0.9452    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6042    1.6689    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.2206    1.6877    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6494    0.9829    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2533    0.2592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4741    1.0018    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.0329    2.3737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2643    2.6735    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1947    3.1827    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8577    2.3548    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.2864    3.0597    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1112    3.0408    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5399    3.7457    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  5  6  2  0  0  0  0
  7  6  1  6  0  0  0
  2  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  2  0  0  0  0
 10 12  1  0  0  0  0
 12 13  1  1  0  0  0
 12 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  6  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  2  0  0  0  0
 17 22  1  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 22 25  1  0  0  0  0
 12 25  1  0  0  0  0
 25 26  1  1  0  0  0
 26 27  1  0  0  0  0
  5 27  1  0  0  0  0
 27 28  1  1  0  0  0
M  END
> <DATABASE_ID>
NP0245108

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(=O)O[C@H]1C[C@H](O)[C@]2(C)[C@H](C[C@@H](O)C3=C[C@@H](CCC2=O)C(=C)C3=O)C1(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C22H30O6/c1-11-13-6-7-17(25)22(5)16(9-15(24)14(8-13)20(11)27)21(3,4)19(10-18(22)26)28-12(2)23/h8,13,15-16,18-19,24,26H,1,6-7,9-10H2,2-5H3/t13-,15-,16-,18+,19+,22-/m1/s1

> <INCHI_KEY>
SQKIJEMRJCDDMH-MMESEBFASA-N

> <FORMULA>
C22H30O6

> <MOLECULAR_WEIGHT>
390.476

> <EXACT_MASS>
390.204238686

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
58

> <JCHEM_AVERAGE_POLARIZABILITY>
41.308331942517526

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(2R,4R,6S,8S,9S,13R)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0^{4,9}]hexadec-1(16)-en-6-yl acetate

> <JCHEM_LOGP>
1.8296215449999993

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.723319787753226

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.119470325118403

> <JCHEM_PKA_STRONGEST_BASIC>
-3.0402953274567848

> <JCHEM_POLAR_SURFACE_AREA>
100.90000000000002

> <JCHEM_REFRACTIVITY>
103.56949999999999

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(2R,4R,6S,8S,9S,13R)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0^{4,9}]hexadec-1(16)-en-6-yl acetate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       9.501   1.659   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       8.171   2.436   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       8.045   3.971   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       9.213   4.975   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       6.547   4.325   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.747   3.010   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       6.486   1.659   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.686   0.343   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       3.695   0.851   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       3.879   2.180   0.000  0.00  0.00           C+0
HETATM   11  O   UNK     0       1.416   2.237   0.000  0.00  0.00           O+0
HETATM   12  C   UNK     0       4.207   3.045   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.955   2.202   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       3.407   1.729   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0       4.146   0.378   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0       1.867   1.764   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.128   3.115   0.000  0.00  0.00           C+0
HETATM   18  O   UNK     0      -0.412   3.150   0.000  0.00  0.00           O+0
HETATM   19  C   UNK     0      -1.212   1.835   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -0.473   0.484   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      -2.752   1.870   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       1.928   4.431   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       0.493   4.991   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       2.230   5.941   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.468   4.396   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       4.268   5.711   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       5.808   5.676   0.000  0.00  0.00           C+0
HETATM   28  O   UNK     0       6.608   6.992   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    7                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   27                                                  
CONECT    6    5    7                                                       
CONECT    7    6    2    8                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12                                                  
CONECT   11   10                                                            
CONECT   12   10   13   14   25                                             
CONECT   13   12                                                            
CONECT   14   12   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   22                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
CONECT   22   17   23   24   25                                             
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   22   12   26                                                  
CONECT   26   25   27                                                       
CONECT   27   26    5   28                                                  
CONECT   28   27                                                            
MASTER        0    0    0    0    0    0    0    0   28    0   60    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₂H₃₀O₆

Average Mass

390.4760 Da

Monoisotopic Mass

390.20424 Da

IUPAC Name

(2R,4R,6S,8S,9S,13R)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0^{4,9}]hexadec-1(16)-en-6-yl acetate

Traditional Name

(2R,4R,6S,8S,9S,13R)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0^{4,9}]hexadec-1(16)-en-6-yl acetate

CAS Registry Number

Not Available

SMILES

CC(=O)O[C@H]1C[C@H](O)[C@]2(C)[C@H](C[C@@H](O)C3=C[C@@H](CCC2=O)C(=C)C3=O)C1(C)C

InChI Identifier

InChI=1S/C22H30O6/c1-11-13-6-7-17(25)22(5)16(9-15(24)14(8-13)20(11)27)21(3,4)19(10-18(22)26)28-12(2)23/h8,13,15-16,18-19,24,26H,1,6-7,9-10H2,2-5H3/t13-,15-,16-,18+,19+,22-/m1/s1

InChI Key

SQKIJEMRJCDDMH-MMESEBFASA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Isodon shikokianus	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic alcohols and derivatives. These are organic compounds containing an aliphatic ring substituted with at least one hydroxyl group.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Alcohols and polyols

Direct Parent

Cyclic alcohols and derivatives

Alternative Parents

Substituents

Cyclic alcohol
Secondary alcohol
Ketone
Carboxylic acid ester
Monocarboxylic acid or derivatives
Carboxylic acid derivative
Organic oxide
Hydrocarbon derivative
Carbonyl group
Aliphatic homopolycyclic compound

Molecular Framework

Aliphatic homopolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.83	ChemAxon
pKa (Strongest Acidic)	14.12	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	100.9 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	103.57 m³·mol⁻¹	ChemAxon
Polarizability	41.31 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

101665686

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Motahari Rad H, Mowla SJ, Ramazanali F, Rezazadeh Valojerdi M: Characterization of altered microRNAs related to different phenotypes of polycystic ovarian syndrome (PCOS) in serum, follicular fluid, and cumulus cells. Taiwan J Obstet Gynecol. 2022 Sep;61(5):768-779. doi: 10.1016/j.tjog.2022.05.013. [PubMed:36088043 ]
Pontrelli G, Huscher C, Scioscia M, Brusca F, Tedeschi U, Greco P, Mancarella M, Biglia N, Novara L: End-to-end versus side-to-end anastomosis after bowel resection for deep infiltrating endometriosis: a retrospective study. J Gynecol Obstet Hum Reprod. 2022 Sep 7:102472. doi: 10.1016/j.jogoh.2022.102472. [PubMed:36087927 ]
Qi H, Cai H, Liu X, Liu S, Ding C, Xu M: The cytokinin type-B response regulator PeRR12 is a negative regulator of adventitious rooting and salt tolerance in poplar. Plant Sci. 2022 Sep 7:111456. doi: 10.1016/j.plantsci.2022.111456. [PubMed:36087886 ]
Shah L, Latif A, Williams KJ, Tirella A: Role of stiffness and physico-chemical properties of tumour microenvironment on breast cancer cell stemness. Acta Biomater. 2022 Sep 7. pii: S1742-7061(22)00557-8. doi: 10.1016/j.actbio.2022.08.074. [PubMed:36087866 ]
Temme JS, Crainic JA, Walker LM, Yang W, Tan Z, Huang X, Gildersleeve JC: Microarray-guided evaluation of the frequency, B cell origins, and selectivity of human glycan-binding antibodies reveals new insights and novel antibodies. J Biol Chem. 2022 Sep 7:102468. doi: 10.1016/j.jbc.2022.102468. [PubMed:36087840 ]
LOTUS database [Link]

Showing NP-Card for (2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate (NP0245108)

MOL for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

3D MOL for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

3D SDF for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

3D-SDF for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

PDB for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

3D PDB for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

SMILES for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

INCHI for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

Structure for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)

3D Structure for NP0245108 ((2r,4r,6s,8s,9s,13r)-2,8-dihydroxy-5,5,9-trimethyl-14-methylidene-10,15-dioxotricyclo[11.2.1.0⁴,⁹]hexadec-1(16)-en-6-yl acetate)