NP-MRD: Showing NP-Card for n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid (NP0244958)

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Record Information

Version

2.0

Created at

2022-09-07 05:51:55 UTC

Updated at

2022-09-07 05:51:55 UTC

NP-MRD ID

NP0244958

Secondary Accession Numbers

None

Natural Product Identification

Common Name

n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid

Description

N-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid belongs to the class of organic compounds known as cinnamic acid amides. These are amides of cinnamic acids. Cinnamic acid is an aromatic compound containing a benzene and a carboxylic acid group forming 3-phenylprop-2-enoic acid. n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid is found in Piper lolot. N-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 34 34  0  0  0  0  0  0  0  0999 V2000
    0.5113    0.3991   -1.0290 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.3757   -0.2344    0.0153 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3674   -0.8383    0.8260 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6174   -0.9286    0.8003 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6841   -0.4747   -0.0404 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9718   -1.0340    0.1996 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0689   -0.6386   -0.5207 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9712    0.3085   -1.4986 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7375    0.8581   -1.7422 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6370    0.4734   -1.0313 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0010   -0.3708    0.4546 N   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0454    0.2184   -0.3306 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3615   -0.0687    0.3425 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.4144    0.4586    1.6293 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5295    0.5316   -0.4298 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7881    0.1022    0.3282 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6465    0.6381    1.6211 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.9232   -1.3964    1.7545 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0089   -1.5331    1.7193 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0904   -1.7852    0.9578 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0530   -1.0711   -0.3318 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.8203    0.6431   -2.0870 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6207    1.6178   -2.5161 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7249    0.9596   -1.2518 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2254   -0.8809    1.3138 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8776    1.3104   -0.4794 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9877   -0.2436   -1.3405 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4641   -1.1729    0.3950 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8002    1.2387    1.6916 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5572    0.2013   -1.4779 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4358    1.6294   -0.4236 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7361   -1.0020    0.4026 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6883    0.4603   -0.1776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6251    1.6247    1.5828 H   0  0  0  0  0  0  0  0  0  0  0  0
 17 16  1  0
 16 15  1  0
 15 13  1  0
 13 14  1  0
 13 12  1  0
 12 11  1  0
 11  2  1  0
  2  1  2  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  2  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  2  0
 10  5  1  0
 17 34  1  0
 16 32  1  0
 16 33  1  0
 15 30  1  0
 15 31  1  0
 13 28  1  1
 14 29  1  0
 12 26  1  0
 12 27  1  0
 11 25  1  0
  3 18  1  0
  4 19  1  0
  6 20  1  0
  7 21  1  0
  8 22  1  0
  9 23  1  0
 10 24  1  0
M  END

  Mrv1533004171514212D          

 17 17  0  0  0  0            999 V2000
    1.4289   -4.9500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724   -6.1875    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013   -5.3625    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158   -4.1250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1447   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -4.9500    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2881   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5737   -6.6000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8592   -6.1875    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  4  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  2  0  0  0  0
 10  8  1  4  0  0  0
 10 11  2  0  0  0  0
 11 12  1  0  0  0  0
 12 13  2  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 15 16  1  0  0  0  0
 16 17  2  0  0  0  0
 12 17  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0244958

> <DATABASE_NAME>
NP-MRD

> <SMILES>
OCCC(O)CNC(=O)C=CC1=CC=CC=C1

> <INCHI_IDENTIFIER>
InChI=1S/C13H17NO3/c15-9-8-12(16)10-14-13(17)7-6-11-4-2-1-3-5-11/h1-7,12,15-16H,8-10H2,(H,14,17)

> <INCHI_KEY>
ATZHDBJCZRXKLC-UHFFFAOYSA-N

> <FORMULA>
C13H17NO3

> <MOLECULAR_WEIGHT>
235.283

> <EXACT_MASS>
235.120843411

> <JCHEM_ACCEPTOR_COUNT>
3

> <JCHEM_ATOM_COUNT>
34

> <JCHEM_AVERAGE_POLARIZABILITY>
26.028183106572897

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
N-(2,4-dihydroxybutyl)-3-phenylprop-2-enamide

> <ALOGPS_LOGP>
0.76

> <JCHEM_LOGP>
0.29234249699999976

> <ALOGPS_LOGS>
-2.38

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.730506425284648

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.725561331261517

> <JCHEM_PKA_STRONGEST_BASIC>
-0.3639499458478469

> <JCHEM_POLAR_SURFACE_AREA>
69.56

> <JCHEM_REFRACTIVITY>
66.89900000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
9.78e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
N-(2,4-dihydroxybutyl)-3-phenylprop-2-enamide

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 17-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   17-APR-15         0                                  
HETATM    1  O   UNK     0       2.667  -9.240   0.000  0.00  0.00           O+0
HETATM    2  C   UNK     0       4.001 -10.010   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       5.335  -9.240   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       6.668 -10.010   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0       6.668 -11.550   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0       8.002  -9.240   0.000  0.00  0.00           C+0
HETATM    7  N   UNK     0       9.336 -10.010   0.000  0.00  0.00           N+0
HETATM    8  C   UNK     0      10.669  -9.240   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      10.669  -7.700   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      12.003 -10.010   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      13.337  -9.240   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.670 -10.010   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      16.004  -9.240   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      17.338 -10.010   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      17.338 -11.550   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      16.004 -12.320   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      14.670 -11.550   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5    6                                                  
CONECT    5    4                                                            
CONECT    6    4    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13   17                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   12                                                       
MASTER        0    0    0    0    0    0    0    0   17    0   34    0
END

View in JSmol

Synonyms

Value	Source
N-(2,4-Dihydroxybutyl)-3-phenylprop-2-enimidate	Generator

Chemical Formula

C₁₃H₁₇NO₃

Average Mass

235.2830 Da

Monoisotopic Mass

235.12084 Da

IUPAC Name

N-(2,4-dihydroxybutyl)-3-phenylprop-2-enamide

Traditional Name

N-(2,4-dihydroxybutyl)-3-phenylprop-2-enamide

CAS Registry Number

Not Available

SMILES

OCCC(O)CNC(=O)C=CC1=CC=CC=C1

InChI Identifier

InChI=1S/C13H17NO3/c15-9-8-12(16)10-14-13(17)7-6-11-4-2-1-3-5-11/h1-7,12,15-16H,8-10H2,(H,14,17)

InChI Key

ATZHDBJCZRXKLC-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Piper lolot	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cinnamic acid amides. These are amides of cinnamic acids. Cinnamic acid is an aromatic compound containing a benzene and a carboxylic acid group forming 3-phenylprop-2-enoic acid.

Kingdom

Organic compounds

Super Class

Phenylpropanoids and polyketides

Class

Cinnamic acids and derivatives

Sub Class

Cinnamic acid amides

Direct Parent

Cinnamic acid amides

Alternative Parents

Substituents

Cinnamic acid amide
Styrene
Monocyclic benzene moiety
Benzenoid
Carboxamide group
Secondary alcohol
Secondary carboxylic acid amide
Carboxylic acid derivative
Organic nitrogen compound
Primary alcohol
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Alcohol
Carbonyl group
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	0.76	ALOGPS
logP	0.29	ChemAxon
logS	-2.4	ALOGPS
pKa (Strongest Acidic)	14.73	ChemAxon
pKa (Strongest Basic)	-0.36	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	3	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	69.56 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	66.9 m³·mol⁻¹	ChemAxon
Polarizability	26.03 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid (NP0244958)

MOL for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

3D MOL for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

3D SDF for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

3D-SDF for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

PDB for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

3D PDB for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

SMILES for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

INCHI for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

Structure for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)

3D Structure for NP0244958 (n-(2,4-dihydroxybutyl)-3-phenylprop-2-enimidic acid)