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Record Information
Version2.0
Created at2022-09-07 05:44:54 UTC
Updated at2022-09-07 05:44:54 UTC
NP-MRD IDNP0244860
Secondary Accession NumbersNone
Natural Product Identification
Common Name(2r,5z)-10-[(1s,2r)-2-decylcyclopropyl]-n-[(2s,3r)-10-[(1s,2r)-2-decylcyclopropyl]-1-{[(2r,5r,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(3-methylbut-2-en-1-yl)oxy]oxan-2-yl]oxy}-3-hydroxydecan-2-yl]-2-hydroxydec-5-enimidic acid
DescriptionPlakoside A belongs to the class of organic compounds known as glycosphingolipids. These are sphingolipids containing a saccharide moiety glycosidically attached to the sphingoid base. Although saccharide moieties are mostly O-glycosidically linked to the ceramide moiety, other sphingolipids with glycosidic bonds of other types (e.G. S-,C-, or N-type) has been reported. (2r,5z)-10-[(1s,2r)-2-decylcyclopropyl]-n-[(2s,3r)-10-[(1s,2r)-2-decylcyclopropyl]-1-{[(2r,5r,6r)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(3-methylbut-2-en-1-yl)oxy]oxan-2-yl]oxy}-3-hydroxydecan-2-yl]-2-hydroxydec-5-enimidic acid is found in Plakortis simplex. Based on a literature review very few articles have been published on Plakoside A.
Structure
Thumb
SynonymsNot Available
Chemical FormulaC57H105NO9
Average Mass948.4650 Da
Monoisotopic Mass947.77893 Da
IUPAC Name(2R,5Z)-10-[(1S,2R)-2-decylcyclopropyl]-N-[(2S,3R)-10-[(1S,2R)-2-decylcyclopropyl]-1-{[(2R,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(3-methylbut-2-en-1-yl)oxy]oxan-2-yl]oxy}-3-hydroxydecan-2-yl]-2-hydroxydec-5-enimidic acid
Traditional Name(2R,5Z)-10-[(1S,2R)-2-decylcyclopropyl]-N-[(2S,3R)-10-[(1S,2R)-2-decylcyclopropyl]-1-{[(2R,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(3-methylbut-2-en-1-yl)oxy]oxan-2-yl]oxy}-3-hydroxydecan-2-yl]-2-hydroxydec-5-enimidic acid
CAS Registry NumberNot Available
SMILES
CCCCCCCCCC[C@@H]1C[C@@H]1CCCCCCC[C@@H](O)[C@H](CO[C@@H]1O[C@H](CO)[C@H](O)C(O)C1OCC=C(C)C)N=C(O)[C@H](O)CC\C=C/CCCC[C@H]1C[C@H]1CCCCCCCCCC
InChI Identifier
InChI=1S/C57H105NO9/c1-5-7-9-11-13-15-20-26-32-45-40-47(45)34-28-22-17-18-24-31-37-51(61)56(64)58-49(43-66-57-55(65-39-38-44(3)4)54(63)53(62)52(42-59)67-57)50(60)36-30-25-19-23-29-35-48-41-46(48)33-27-21-16-14-12-10-8-6-2/h18,24,38,45-55,57,59-63H,5-17,19-23,25-37,39-43H2,1-4H3,(H,58,64)/b24-18-/t45-,46-,47+,48+,49+,50-,51-,52-,53+,54?,55?,57-/m1/s1
InChI KeyYYLGLAVLOKSOMN-RLBRETAGSA-N
Experimental Spectra
Not Available
Predicted Spectra
Not Available
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Plakortis simplexLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as glycosphingolipids. These are sphingolipids containing a saccharide moiety glycosidically attached to the sphingoid base. Although saccharide moieties are mostly O-glycosidically linked to the ceramide moiety, other sphingolipids with glycosidic bonds of other types (e.G. S-,C-, or N-type) has been reported.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSphingolipids
Sub ClassGlycosphingolipids
Direct ParentGlycosphingolipids
Alternative Parents
Substituents
  • Glycosphingolipid
  • Fatty acyl glycoside
  • Fatty acyl glycoside of mono- or disaccharide
  • Alkyl glycoside
  • Glycosyl compound
  • O-glycosyl compound
  • Fatty acyl
  • Fatty amide
  • Monosaccharide
  • Oxane
  • N-acyl-amine
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Secondary alcohol
  • Oxacycle
  • Organoheterocyclic compound
  • Carboxylic acid derivative
  • Dialkyl ether
  • Ether
  • Acetal
  • Organopnictogen compound
  • Organic oxygen compound
  • Carbonyl group
  • Organic nitrogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Alcohol
  • Organonitrogen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External Descriptors
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP14.67ChemAxon
pKa (Strongest Acidic)3.99ChemAxon
pKa (Strongest Basic)1.79ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count6ChemAxon
Polar Surface Area161.43 ŲChemAxon
Rotatable Bond Count44ChemAxon
Refractivity275.62 m³·mol⁻¹ChemAxon
Polarizability119.89 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID24823216
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound42608353
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]