NP-MRD: Showing NP-Card for (3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane (NP0244823)

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Record Information

Version

2.0

Created at

2022-09-07 05:42:00 UTC

Updated at

2022-09-07 05:42:00 UTC

NP-MRD ID

NP0244823

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane

Description

(3S,6S)-3-bromo-6-[(1S,3S,4S)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane belongs to the class of organic compounds known as cyclohexyl halides. These are organohalogen compounds containing a monocyclic cyclohexane moiety that is substituted at one or more positions by an halogen atom. (3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane is found in Laurencia catarinensis. Based on a literature review very few articles have been published on (3S,6S)-3-bromo-6-[(1S,3S,4S)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane.

Structure

MOL 3D MOL SDF PDB SMILES InChI

     RDKit          3D

 44 45  0  0  0  0  0  0  0  0999 V2000
   -3.3152    0.4114    1.0819 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3091    0.7106   -0.0270 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3018    2.2459   -0.1197 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0715    0.3499    0.3333 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6953   -0.9519    0.2528 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.0032   -1.6298    1.5759 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8252   -0.9211    0.1429 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.2256   -0.1647   -1.0707 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6329    0.3366   -1.0911 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3784    0.0870    0.2007 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6168    0.9875    0.1643 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8072   -1.6015    0.4286 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    2.4657    0.5922    1.2991 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.7640    2.2989    0.7151 Br  0  0  0  0  0  0  0  0  0  0  0  0
    1.3660   -0.4382    1.4333 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3143   -1.7559   -0.8384 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0591   -0.9809   -1.8702 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7897    0.2200   -1.3613 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.6503    1.6112   -2.7146 Br  0  0  0  0  0  0  0  0  0  0  0  0
   -3.6184   -0.6313    1.1039 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8804    0.7926    2.0282 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2155    1.0247    0.8399 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3003    2.6398   -0.3128 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8302    2.6733    0.7915 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5869    2.4781   -0.9623 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1777   -2.3254    1.8354 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1950   -0.9007    2.3899 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9029   -2.3020    1.4432 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1321   -1.9872    0.0015 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5319    0.6953   -1.1892 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0831   -0.7964   -1.9743 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2467   -0.1222   -1.9051 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6611    1.4316   -1.2721 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2169    0.9104    1.0708 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1922    0.7093   -0.7509 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2334    2.0216   -0.0240 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9899    0.6733    2.2609 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5907    0.0398    2.1029 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7942   -1.2654    2.0613 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4883   -2.3258   -1.3313 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9938   -2.5383   -0.4360 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8153   -1.6391   -2.3663 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3565   -0.7063   -2.6884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8834    0.0433   -1.2517 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  2  4  1  0
  4  5  1  0
  5  6  1  1
  5 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
  5  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 10 12  1  1
 10 13  1  0
 13 14  1  0
 13 15  1  0
 18  2  1  0
 15  7  1  0
  1 20  1  0
  1 21  1  0
  1 22  1  0
  3 23  1  0
  3 24  1  0
  3 25  1  0
  6 26  1  0
  6 27  1  0
  6 28  1  0
 16 40  1  0
 16 41  1  0
 17 42  1  0
 17 43  1  0
 18 44  1  1
  7 29  1  6
  8 30  1  0
  8 31  1  0
  9 32  1  0
  9 33  1  0
 11 34  1  0
 11 35  1  0
 11 36  1  0
 13 37  1  1
 15 38  1  0
 15 39  1  0
M  END


  Mrv1652309072207422D          

 19 20  0  0  1  0            999 V2000
    1.7751   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2448   -1.0445    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9592   -1.4570    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9592   -2.2820    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7717   -2.1387    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2414   -3.0572    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.0539   -3.2005    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3360   -3.9757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8057   -4.6077    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.5202   -5.0202    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5236   -5.3830    0.0000 Cl  0  0  0  0  0  0  0  0  0  0  0  0
    1.9933   -4.4645    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.4630   -5.0965    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
    1.7111   -3.6892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2448   -2.6945    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5303   -2.2820    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5303   -1.4570    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1842   -1.0445    0.0000 Br  0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  1  0  0  0
  5  7  1  6  0  0  0
  7  8  1  1  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  1  0  0  0
 10 12  1  6  0  0  0
 10 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
  7 15  1  0  0  0  0
  5 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
  2 18  1  0  0  0  0
 18 19  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0244823

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC1(C)O[C@@](C)(CC[C@@H]1Br)[C@H]1CC[C@](C)(Cl)[C@@H](Br)C1

> <INCHI_IDENTIFIER>
InChI=1S/C15H25Br2ClO/c1-13(2)11(16)6-8-15(4,19-13)10-5-7-14(3,18)12(17)9-10/h10-12H,5-9H2,1-4H3/t10-,11-,12-,14-,15-/m0/s1

> <INCHI_KEY>
FIHHUYBIKUKVFD-YLXLXVFQSA-N

> <FORMULA>
C15H25Br2ClO

> <MOLECULAR_WEIGHT>
416.62

> <EXACT_MASS>
413.996069

> <JCHEM_ACCEPTOR_COUNT>
1

> <JCHEM_ATOM_COUNT>
44

> <JCHEM_AVERAGE_POLARIZABILITY>
36.675572723083974

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(3S,6S)-3-bromo-6-[(1S,3S,4S)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane

> <JCHEM_LOGP>
5.305511286999998

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
2

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_BASIC>
-4.213723150065409

> <JCHEM_POLAR_SURFACE_AREA>
9.23

> <JCHEM_REFRACTIVITY>
88.41559999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
1

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(3S,6S)-3-bromo-6-[(1S,3S,4S)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane

> <JCHEM_VEBER_RULE>
1

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       3.313  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.324  -1.950   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       3.657  -2.720   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       3.657  -4.260   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.174  -3.992   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.184  -5.707   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       5.701  -5.974   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       6.227  -7.421   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       5.237  -8.601   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       6.571  -9.371   0.000  0.00  0.00           C+0
HETATM   12 Cl   UNK     0       4.711 -10.048   0.000  0.00  0.00          Cl+0
HETATM   13  C   UNK     0       3.721  -8.334   0.000  0.00  0.00           C+0
HETATM   14 Br   UNK     0       2.731  -9.513   0.000  0.00  0.00          Br+0
HETATM   15  C   UNK     0       3.194  -6.887   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.324  -5.030   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       0.990  -4.260   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       0.990  -2.720   0.000  0.00  0.00           C+0
HETATM   19 Br   UNK     0      -0.344  -1.950   0.000  0.00  0.00          Br+0
CONECT    1    2                                                            
CONECT    2    1    3    4   18                                             
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6    7   16                                             
CONECT    6    5                                                            
CONECT    7    5    8   15                                                  
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   12   13                                             
CONECT   11   10                                                            
CONECT   12   10                                                            
CONECT   13   10   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13    7                                                       
CONECT   16    5   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17    2   19                                                  
CONECT   19   18                                                            
MASTER        0    0    0    0    0    0    0    0   19    0   40    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₅H₂₅Br₂ClO

Average Mass

416.6200 Da

Monoisotopic Mass

413.99607 Da

IUPAC Name

(3S,6S)-3-bromo-6-[(1S,3S,4S)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane

Traditional Name

(3S,6S)-3-bromo-6-[(1S,3S,4S)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane

CAS Registry Number

Not Available

SMILES

CC1(C)O[C@@](C)(CC[C@@H]1Br)[C@H]1CC[C@](C)(Cl)[C@@H](Br)C1

InChI Identifier

InChI=1S/C15H25Br2ClO/c1-13(2)11(16)6-8-15(4,19-13)10-5-7-14(3,18)12(17)9-10/h10-12H,5-9H2,1-4H3/t10-,11-,12-,14-,15-/m0/s1

InChI Key

FIHHUYBIKUKVFD-YLXLXVFQSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Laurencia catarinensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclohexyl halides. These are organohalogen compounds containing a monocyclic cyclohexane moiety that is substituted at one or more positions by an halogen atom.

Kingdom

Organic compounds

Super Class

Organohalogen compounds

Class

Alkyl halides

Sub Class

Cyclohexyl halides

Direct Parent

Cyclohexyl halides

Alternative Parents

Substituents

Cyclohexyl halide
Oxane
Oxacycle
Organoheterocyclic compound
Ether
Dialkyl ether
Organic oxygen compound
Hydrocarbon derivative
Organooxygen compound
Organochloride
Organobromide
Alkyl chloride
Alkyl bromide
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	5.31	ChemAxon
pKa (Strongest Basic)	-4.2	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	1	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	9.23 Å²	ChemAxon
Rotatable Bond Count	1	ChemAxon
Refractivity	88.42 m³·mol⁻¹	ChemAxon
Polarizability	36.68 Å³	ChemAxon
Number of Rings	2	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	Yes	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

163186373

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for (3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane (NP0244823)

MOL for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

3D MOL for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

3D SDF for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

3D-SDF for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

PDB for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

3D PDB for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

SMILES for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

INCHI for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

Structure for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)

3D Structure for NP0244823 ((3s,6s)-3-bromo-6-[(1s,3s,4s)-3-bromo-4-chloro-4-methylcyclohexyl]-2,2,6-trimethyloxane)