NP-MRD: Showing NP-Card for (3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one (NP0243927)

Jump To Section:

Identification Spectra BioTaxonomy ChemoTaxonomy Physical properties Links References XML

Record Information

Version

2.0

Created at

2022-09-07 04:35:33 UTC

Updated at

2022-09-07 04:35:34 UTC

NP-MRD ID

NP0243927

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one

Description

DEOXAPHOMIN belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone. (3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one is found in Cirsium arvense, Boeremia exigua and Sonchus arvensis. (3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one was first documented in 2008 (PMID: 18598037). Based on a literature review a small amount of articles have been published on DEOXAPHOMIN (PMID: 25264583) (PMID: 18155260) (PMID: 35736043) (PMID: 24961709).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072206352D          

 34 37  0  0  1  0            999 V2000
    2.3321   -0.9276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9688   -1.5000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7577   -1.2586    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6787   -0.4045    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3612   -1.8211    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1501   -1.5796    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3355   -0.7757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1244   -0.5343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8109   -1.1206    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.1250   -0.2967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6358   -1.1347    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8772   -1.9236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2015   -2.3970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9607   -3.2671    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6094   -3.8368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1718   -3.5085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5683   -2.9460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0126   -3.1792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7941   -4.0790    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1759   -2.6250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6493   -3.3006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5318   -3.6036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1530   -3.9597    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3728   -3.6913    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6490   -4.1605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7693   -4.9865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5358   -5.2918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6546   -6.1082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0071   -6.6193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2406   -6.3141    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1217   -5.4977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3870   -2.8664    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7835   -2.3039    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9376   -2.4327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
  5 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 21 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 26 31  1  0  0  0  0
 32 24  1  6  0  0  0
 20 32  1  0  0  0  0
 32 33  1  0  0  0  0
  2 33  1  0  0  0  0
 33 34  1  6  0  0  0
M  END

     RDKit          3D

 71 74  0  0  0  0  0  0  0  0999 V2000
    2.4604   -3.6668    0.6278 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7143   -2.5846    0.5558 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3259   -2.6862    0.0979 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.4083   -3.6669    0.7719 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3833   -1.3665    0.3705 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7939   -1.6536    0.0022 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8769   -1.4631    0.6875 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0024   -0.8925    2.0556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2034    0.0451    2.1369 C   0  0  2  0  0  0  0  0  0  0  0  0
   -5.4717   -0.7312    1.9061 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0764    1.2734    1.3130 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7811    1.2501   -0.0090 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1477    2.2233   -0.9982 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9475    1.6229   -1.7074 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.1868    1.5477   -3.1008 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7390    2.4538   -1.5448 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6661    2.1848   -0.8482 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2682    1.0829   -0.0435 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3250    1.1811    1.2393 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2493   -0.2695   -0.4522 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.1972   -0.5299   -1.8785 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9405   -0.7526   -2.6588 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3607   -0.5406   -2.3968 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.4121   -0.2894   -1.4337 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.2236    0.9041   -1.8476 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3243    1.2666   -0.9415 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2103    2.2132    0.0560 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2738    2.5296    0.9099 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4759    1.8794    0.7550 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.6258    0.9348   -0.2238 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5614    0.6381   -1.0559 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.7281   -0.2034   -0.1264 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.1757   -1.2066    0.9064 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.6476   -1.2480    1.1363 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4750   -3.6019    0.9551 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0456   -4.6198    0.3556 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2632   -2.9493   -0.9841 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3195   -3.6427    0.3710 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2621   -1.1257    1.4315 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9014   -2.0925   -1.0122 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8687   -1.7459    0.2543 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0934   -0.4704    2.4635 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2746   -1.7631    2.7117 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2346    0.3717    3.2184 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6634   -0.9953    0.8681 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3625   -0.1893    2.2852 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3938   -1.6816    2.4896 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4903    2.1786    1.8571 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0148    1.5048    1.1774 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8278    1.6106    0.1406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8536    0.2822   -0.4989 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9185    2.4072   -1.7732 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9177    3.1911   -0.5277 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8325    0.6193   -1.2759 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4343    0.6010   -3.3398 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8273    3.4141   -2.1196 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0840    3.0299   -0.8815 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0747   -1.5625   -3.2206 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1113   -1.1730   -1.5108 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5278    1.7733   -1.9730 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6118    0.6862   -2.8851 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2899    2.7570    0.2124 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1461    3.2793    1.6827 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2914    2.1250    1.4133 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.5769    0.4269   -0.3393 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6778   -0.1061   -1.8280 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9980    0.7985    0.3314 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6797   -0.9396    1.8736 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2172   -1.6783    0.3037 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0224   -0.2626    1.4888 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7988   -1.9368    2.0240 H   0  0  0  0  0  0  0  0  0  0  0  0
 34 33  1  0
 33 32  1  0
 32 24  1  0
 24 25  1  0
 25 26  1  0
 26 27  2  0
 27 28  1  0
 28 29  2  0
 29 30  1  0
 30 31  2  0
 24 23  1  0
 23 21  2  0
 21 22  1  0
 20 21  1  6
 20  5  1  0
  5  6  1  0
  6  7  2  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
  9 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  1  0
 14 15  1  0
 14 16  1  0
 16 17  2  0
 17 18  1  0
 18 19  2  0
  5  3  1  0
  3  4  1  0
  3  2  1  0
  2  1  2  3
  2 33  1  0
 20 32  1  0
 18 20  1  0
 31 26  1  0
 34 69  1  0
 34 70  1  0
 34 71  1  0
 33 68  1  1
 32 67  1  1
 24 59  1  1
 25 60  1  0
 25 61  1  0
 27 62  1  0
 28 63  1  0
 29 64  1  0
 30 65  1  0
 31 66  1  0
 22 58  1  0
  5 39  1  1
  6 40  1  0
  7 41  1  0
  8 42  1  0
  8 43  1  0
  9 44  1  1
 10 45  1  0
 10 46  1  0
 10 47  1  0
 11 48  1  0
 11 49  1  0
 12 50  1  0
 12 51  1  0
 13 52  1  0
 13 53  1  0
 14 54  1  1
 15 55  1  0
 16 56  1  0
 17 57  1  0
  3 37  1  6
  4 38  1  0
  1 35  1  0
  1 36  1  0
M  END


  Mrv1652309072206352D          

 34 37  0  0  1  0            999 V2000
    2.3321   -0.9276    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9688   -1.5000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7577   -1.2586    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.6787   -0.4045    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3612   -1.8211    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.1501   -1.5796    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3355   -0.7757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1244   -0.5343    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8109   -1.1206    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    7.1250   -0.2967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6358   -1.1347    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8772   -1.9236    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2015   -2.3970    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9607   -3.2671    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    7.6094   -3.8368    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.1718   -3.5085    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5683   -2.9460    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0126   -3.1792    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7941   -4.0790    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1759   -2.6250    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.6493   -3.3006    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.5318   -3.6036    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1530   -3.9597    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    3.3728   -3.6913    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.6490   -4.1605    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7693   -4.9865    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5358   -5.2918    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6546   -6.1082    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0071   -6.6193    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2406   -6.3141    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1217   -5.4977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3870   -2.8664    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.7835   -2.3039    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.9376   -2.4327    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  1  0  0  0
  3  5  1  0  0  0  0
  5  6  1  6  0  0  0
  6  7  2  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  1  0  0  0
  9 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  1  0  0  0
 14 16  1  0  0  0  0
 16 17  2  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
  5 20  1  0  0  0  0
 20 21  1  6  0  0  0
 21 22  1  0  0  0  0
 21 23  2  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  1  0  0  0
 25 26  1  0  0  0  0
 26 27  2  0  0  0  0
 27 28  1  0  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 30 31  2  0  0  0  0
 26 31  1  0  0  0  0
 32 24  1  6  0  0  0
 20 32  1  0  0  0  0
 32 33  1  0  0  0  0
  2 33  1  0  0  0  0
 33 34  1  6  0  0  0
M  END
> <DATABASE_ID>
NP0243927

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2[C@H](CC3=CC=CC=C3)N=C(O)[C@@]22[C@@H](\C=C\C[C@H](C)CCC[C@@H](O)\C=C\C2=O)[C@H](O)C1=C

> <INCHI_IDENTIFIER>
InChI=1S/C29H37NO4/c1-18-9-7-13-22(31)15-16-25(32)29-23(14-8-10-18)27(33)20(3)19(2)26(29)24(30-28(29)34)17-21-11-5-4-6-12-21/h4-6,8,11-12,14-16,18-19,22-24,26-27,31,33H,3,7,9-10,13,17H2,1-2H3,(H,30,34)/b14-8+,16-15+/t18-,19-,22-,23+,24+,26+,27-,29-/m1/s1

> <INCHI_KEY>
GPCJCBIEJCXNKC-TYHYBEHESA-N

> <FORMULA>
C29H37NO4

> <MOLECULAR_WEIGHT>
463.618

> <EXACT_MASS>
463.272258675

> <JCHEM_ACCEPTOR_COUNT>
5

> <JCHEM_ATOM_COUNT>
71

> <JCHEM_AVERAGE_POLARIZABILITY>
51.779629563311694

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(3S,4S,6S,6aR,10R,14R,17aS,17bR)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3H,4H,5H,6H,6aH,9H,10H,11H,12H,13H,14H,17H,17bH-cyclotrideca[e]isoindol-17-one

> <JCHEM_LOGP>
3.9222314040103297

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
14.17688146293088

> <JCHEM_PKA_STRONGEST_ACIDIC>
2.8248609468188834

> <JCHEM_PKA_STRONGEST_BASIC>
5.540926501633111

> <JCHEM_POLAR_SURFACE_AREA>
90.12

> <JCHEM_REFRACTIVITY>
136.20010000000002

> <JCHEM_ROTATABLE_BOND_COUNT>
2

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(3S,4S,6S,6aR,10R,14R,17aS,17bR)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3H,4H,6H,6aH,9H,10H,11H,12H,13H,14H,17bH-cyclotrideca[e]isoindol-17-one

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       4.353  -1.732   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       5.542  -2.800   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.014  -2.349   0.000  0.00  0.00           C+0
HETATM    4  O   UNK     0       6.867  -0.755   0.000  0.00  0.00           O+0
HETATM    5  C   UNK     0       8.141  -3.399   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.614  -2.949   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       9.960  -1.448   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      11.432  -0.997   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      12.714  -2.092   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      13.300  -0.554   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      14.253  -2.118   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      14.704  -3.591   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      13.443  -4.474   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.993  -6.099   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      14.204  -7.162   0.000  0.00  0.00           O+0
HETATM   16  C   UNK     0      11.521  -6.549   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      10.394  -5.499   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       9.357  -5.935   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       8.949  -7.614   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       7.795  -4.900   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       8.679  -6.161   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0      10.326  -6.727   0.000  0.00  0.00           O+0
HETATM   23  N   UNK     0       7.752  -7.391   0.000  0.00  0.00           N+0
HETATM   24  C   UNK     0       6.296  -6.890   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       4.945  -7.766   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       5.169  -9.308   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       6.600  -9.878   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.822 -11.402   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       5.613 -12.356   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       4.182 -11.786   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0       3.961 -10.262   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       6.322  -5.351   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0       5.196  -4.301   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       3.617  -4.541   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3   33                                                  
CONECT    3    2    4    5                                                  
CONECT    4    3                                                            
CONECT    5    3    6   20                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10   11                                                  
CONECT   10    9                                                            
CONECT   11    9   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18    5   21   32                                             
CONECT   21   20   22   23                                                  
CONECT   22   21                                                            
CONECT   23   21   24                                                       
CONECT   24   23   25   32                                                  
CONECT   25   24   26                                                       
CONECT   26   25   27   31                                                  
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   26                                                       
CONECT   32   24   20   33                                                  
CONECT   33   32    2   34                                                  
CONECT   34   33                                                            
MASTER        0    0    0    0    0    0    0    0   34    0   74    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₂₉H₃₇NO₄

Average Mass

463.6180 Da

Monoisotopic Mass

463.27226 Da

IUPAC Name

(3S,4S,6S,6aR,10R,14R,17aS,17bR)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3H,4H,5H,6H,6aH,9H,10H,11H,12H,13H,14H,17H,17bH-cyclotrideca[e]isoindol-17-one

Traditional Name

(3S,4S,6S,6aR,10R,14R,17aS,17bR)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3H,4H,6H,6aH,9H,10H,11H,12H,13H,14H,17bH-cyclotrideca[e]isoindol-17-one

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](CC3=CC=CC=C3)N=C(O)[C@@]22[C@@H](\C=C\C[C@H](C)CCC[C@@H](O)\C=C\C2=O)[C@H](O)C1=C

InChI Identifier

InChI=1S/C29H37NO4/c1-18-9-7-13-22(31)15-16-25(32)29-23(14-8-10-18)27(33)20(3)19(2)26(29)24(30-28(29)34)17-21-11-5-4-6-12-21/h4-6,8,11-12,14-16,18-19,22-24,26-27,31,33H,3,7,9-10,13,17H2,1-2H3,(H,30,34)/b14-8+,16-15+/t18-,19-,22-,23+,24+,26+,27-,29-/m1/s1

InChI Key

GPCJCBIEJCXNKC-TYHYBEHESA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Cirsium arvense	LOTUS Database	35616633
Phoma exigua	LOTUS Database	35616633
Sonchus arvensis	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as isoindolones. These are aromatic polycyclic compounds that an isoindole bearing a ketone.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Isoindoles and derivatives

Sub Class

Isoindolines

Direct Parent

Isoindolones

Alternative Parents

Substituents

Isoindolone
Isoindole
Monocyclic benzene moiety
Pyrrolidone
2-pyrrolidone
Benzenoid
Cyclic alcohol
Pyrrolidine
Secondary alcohol
Secondary carboxylic acid amide
Carboxamide group
Ketone
Lactam
Azacycle
Carboxylic acid derivative
Hydrocarbon derivative
Organonitrogen compound
Organopnictogen compound
Organic oxygen compound
Alcohol
Organooxygen compound
Carbonyl group
Organic nitrogen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.92	ChemAxon
pKa (Strongest Acidic)	2.82	ChemAxon
pKa (Strongest Basic)	5.54	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	5	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	90.12 Å²	ChemAxon
Rotatable Bond Count	2	ChemAxon
Refractivity	136.2 m³·mol⁻¹	ChemAxon
Polarizability	51.78 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00011364

Chemspider ID

31148786

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

76333666

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Masi M, Meyer S, Cimmino A, Clement S, Black B, Evidente A: Pyrenophoric acids B and C, two new phytotoxic sesquiterpenoids produced by Pyrenophora semeniperda. J Agric Food Chem. 2014 Oct 22;62(42):10304-11. doi: 10.1021/jf5035515. Epub 2014 Oct 8. [PubMed:25264583 ]
Cimmino A, Andolfi A, Berestetskiy A, Evidente A: Production of phytotoxins by Phoma exigua var. exigua, a potential mycoherbicide against perennial thistles. J Agric Food Chem. 2008 Aug 13;56(15):6304-9. doi: 10.1021/jf8004178. Epub 2008 Jul 4. [PubMed:18598037 ]
Berestetskiy A, Dmitriev A, Mitina G, Lisker I, Andolfi A, Evidente A: Nonenolides and cytochalasins with phytotoxic activity against Cirsium arvense and Sonchus arvensis: a structure-activity relationships study. Phytochemistry. 2008 Feb;69(4):953-60. doi: 10.1016/j.phytochem.2007.11.003. Epub 2007 Dec 21. [PubMed:18155260 ]
Garcia KYM, Quimque MTJ, Lambert C, Schmidt K, Primahana G, Stradal TEB, Ratzenbock A, Dahse HM, Phukhamsakda C, Stadler M, Surup F, Macabeo APG: Antiproliferative and Cytotoxic Cytochalasins from Sparticola triseptata Inhibit Actin Polymerization and Aggregation. J Fungi (Basel). 2022 May 25;8(6):560. doi: 10.3390/jof8060560. [PubMed:35736043 ]
Chen ZM, Chen HP, Li Y, Feng T, Liu JK: Cytochalasins from cultures of endophytic fungus Phoma multirostrata EA-12. J Antibiot (Tokyo). 2015 Jan;68(1):23-6. doi: 10.1038/ja.2014.87. Epub 2014 Jun 25. [PubMed:24961709 ]
LOTUS database [Link]

Showing NP-Card for (3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one (NP0243927)

MOL for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

3D MOL for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

3D SDF for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

3D-SDF for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

PDB for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

3D PDB for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

SMILES for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

INCHI for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

Structure for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)

3D Structure for NP0243927 ((3s,3ar,4s,6s,6ar,10r,14r,17as)-3-benzyl-1,6,14-trihydroxy-4,10-dimethyl-5-methylidene-3h,3ah,4h,6h,6ah,9h,10h,11h,12h,13h,14h-cyclotrideca[d]isoindol-17-one)