NP-MRD: Showing NP-Card for (1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate (NP0243545)

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Record Information

Version

2.0

Created at

2022-09-07 04:06:58 UTC

Updated at

2022-09-07 04:06:58 UTC

NP-MRD ID

NP0243545

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate

Description

11,13-Dihydrovernodalin belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. (1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate is found in Gymnanthemum amygdalinum. (1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate was first documented in 2017 (PMID: 28397756). Based on a literature review very few articles have been published on 11,13-Dihydrovernodalin.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072206062D          

 26 28  0  0  1  0            999 V2000
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6131    1.3770    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2775    2.1307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6900    2.8452    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5429    2.0445    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0950    2.6576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
 10  8  1  6  0  0  0
  3 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 17 15  1  6  0  0  0
 11 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 18 26  1  0  0  0  0
  3 26  1  0  0  0  0
M  END

     RDKit          3D

 48 50  0  0  0  0  0  0  0  0999 V2000
   -0.2222   -3.2597    1.2310 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7008   -2.0414    1.4281 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3704   -1.2668    0.3338 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6407   -2.0418   -0.0351 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4832   -2.2153    1.0865 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.9156   -1.0393    1.7077 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0002   -0.9882    2.3647 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0509    0.1226    1.5579 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4160    1.2458    2.1294 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7927    0.0950    0.7999 C   0  0  2  0  0  0  0  0  0  0  0  0
   -1.7467    1.0005   -0.3785 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.2116    2.2939   -0.1959 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5726    3.0671   -1.1853 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0009    4.1696   -1.6461 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3022    2.3644   -1.5989 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.8274    3.3400   -1.2597 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2491    1.2533   -0.6215 C   0  0  2  0  0  0  0  0  0  0  0  0
    0.3218   -0.0292   -1.0857 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.5786   -0.2068   -0.4311 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.7662   -0.2383   -1.1461 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7125   -0.1070   -2.3836 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0573   -0.4175   -0.5053 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1437   -0.4362   -1.2589 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1633   -0.5791    0.9837 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4308   -1.7105    1.3195 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5403   -1.2285   -0.9233 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2579   -3.8031    2.0331 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2978   -3.7493    0.2574 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5983   -1.6050    2.4133 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3768   -3.0188   -0.4892 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1738   -1.4147   -0.7787 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3338    1.2834    2.6879 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8174    2.1390    2.0547 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9931    0.4321    1.5252 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1974    0.4759   -1.2496 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3107    2.0763   -2.6476 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6696    3.5871   -0.1690 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7435    4.2793   -1.8074 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8141    2.8529   -1.3153 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1797    1.5588    0.3442 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.5418    0.0644   -2.1892 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0924   -0.5697   -0.7703 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0979   -0.3218   -2.3394 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.2255   -0.6805    1.2375 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.7347    0.3354    1.4698 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9863   -1.5841    2.1761 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.1421   -2.1281   -0.8995 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1718   -1.3560   -1.8312 H   0  0  0  0  0  0  0  0  0  0  0  0
 16 15  1  0
 15 17  1  0
 17 11  1  0
 11 12  1  0
 12 13  1  0
 13 14  2  0
 11 10  1  0
 10  8  1  0
  8  9  2  3
  8  6  1  0
  6  7  2  0
  6  5  1  0
  5  4  1  0
  4  3  1  0
  3 26  1  0
 26 18  1  0
 18 19  1  0
 19 20  1  0
 20 21  2  0
 20 22  1  0
 22 23  2  3
 22 24  1  0
 24 25  1  0
  3  2  1  1
  2  1  2  3
 13 15  1  0
  3 10  1  0
 18 17  1  0
 16 37  1  0
 16 38  1  0
 16 39  1  0
 15 36  1  6
 17 40  1  1
 11 35  1  6
 10 34  1  1
  9 32  1  0
  9 33  1  0
  4 30  1  0
  4 31  1  0
 26 47  1  0
 26 48  1  0
 18 41  1  6
 23 42  1  0
 23 43  1  0
 24 44  1  0
 24 45  1  0
 25 46  1  0
  2 29  1  0
  1 27  1  0
  1 28  1  0
M  END


  Mrv1652309072206062D          

 26 28  0  0  1  0            999 V2000
    2.1434   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289   -0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0000   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289   -1.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.0000    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -0.6131    1.3770    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2775    2.1307    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6900    2.8452    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.5429    2.0445    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.0950    2.6576    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.0000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  3  2  1  1  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  2  0  0  0  0
  6  8  1  0  0  0  0
  8  9  2  0  0  0  0
 10  8  1  6  0  0  0
  3 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 17 15  1  6  0  0  0
 11 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  1  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 18 26  1  0  0  0  0
  3 26  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0243545

> <DATABASE_NAME>
NP-MRD

> <SMILES>
C[C@H]1[C@H]2[C@H](OC1=O)[C@H]1C(=C)C(=O)OC[C@]1(C[C@@H]2OC(=O)C(=C)CO)C=C

> <INCHI_IDENTIFIER>
InChI=1S/C19H22O7/c1-5-19-6-12(25-16(21)9(2)7-20)13-10(3)18(23)26-15(13)14(19)11(4)17(22)24-8-19/h5,10,12-15,20H,1-2,4,6-8H2,3H3/t10-,12-,13+,14+,15-,19+/m0/s1

> <INCHI_KEY>
YWLGRTPMZJKCHR-KGMASNGISA-N

> <FORMULA>
C19H22O7

> <MOLECULAR_WEIGHT>
362.378

> <EXACT_MASS>
362.136553048

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_ATOM_COUNT>
48

> <JCHEM_AVERAGE_POLARIZABILITY>
36.02182375140785

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
(1R,2R,5S,6R,7S,9R)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0^{2,6}]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate

> <JCHEM_LOGP>
1.4631074476666663

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
14.896414215943246

> <JCHEM_PKA_STRONGEST_BASIC>
-2.844108421946423

> <JCHEM_POLAR_SURFACE_AREA>
99.13000000000001

> <JCHEM_REFRACTIVITY>
89.66469999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <JCHEM_TRADITIONAL_IUPAC>
(1R,2R,5S,6R,7S,9R)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0^{2,6}]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0       4.001  -0.770   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       2.667  -1.540   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    5  O   UNK     0      -0.000  -3.080   0.000  0.00  0.00           O+0
HETATM    6  C   UNK     0      -1.334  -2.310   0.000  0.00  0.00           C+0
HETATM    7  O   UNK     0      -2.667  -3.080   0.000  0.00  0.00           O+0
HETATM    8  C   UNK     0      -1.334  -0.770   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -2.667   0.000   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -0.000   1.540   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -1.144   2.570   0.000  0.00  0.00           O+0
HETATM   13  C   UNK     0      -0.518   3.977   0.000  0.00  0.00           C+0
HETATM   14  O   UNK     0      -1.288   5.311   0.000  0.00  0.00           O+0
HETATM   15  C   UNK     0       1.013   3.816   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.044   4.961   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0       5.335   1.540   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0       5.335   0.000   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       9.336   2.310   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4   10   26                                             
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7    8                                                  
CONECT    7    6                                                            
CONECT    8    6    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8    3   11                                                  
CONECT   11   10   12   17                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15                                                  
CONECT   14   13                                                            
CONECT   15   13   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   11   18                                                  
CONECT   18   17   19   26                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24                                                            
CONECT   26   18    3                                                       
MASTER        0    0    0    0    0    0    0    0   26    0   56    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₁₉H₂₂O₇

Average Mass

362.3780 Da

Monoisotopic Mass

362.13655 Da

IUPAC Name

(1R,2R,5S,6R,7S,9R)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0^{2,6}]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate

Traditional Name

(1R,2R,5S,6R,7S,9R)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0^{2,6}]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate

CAS Registry Number

Not Available

SMILES

C[C@H]1[C@H]2[C@H](OC1=O)[C@H]1C(=C)C(=O)OC[C@]1(C[C@@H]2OC(=O)C(=C)CO)C=C

InChI Identifier

InChI=1S/C19H22O7/c1-5-19-6-12(25-16(21)9(2)7-20)13-10(3)18(23)26-15(13)14(19)11(4)17(22)24-8-19/h5,10,12-15,20H,1-2,4,6-8H2,3H3/t10-,12-,13+,14+,15-,19+/m0/s1

InChI Key

YWLGRTPMZJKCHR-KGMASNGISA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Vernonia amygdalina	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Tricarboxylic acids and derivatives

Direct Parent

Tricarboxylic acids and derivatives

Alternative Parents

Substituents

Tricarboxylic acid or derivatives
Beta-hydroxy acid
Delta valerolactone
Delta_valerolactone
Gamma butyrolactone
Hydroxy acid
Oxane
Oxolane
Enoate ester
Alpha,beta-unsaturated carboxylic ester
Lactone
Carboxylic acid ester
Oxacycle
Organoheterocyclic compound
Primary alcohol
Organic oxygen compound
Organooxygen compound
Hydrocarbon derivative
Alcohol
Organic oxide
Carbonyl group
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	1.46	ChemAxon
pKa (Strongest Acidic)	14.9	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	1	ChemAxon
Polar Surface Area	99.13 Å²	ChemAxon
Rotatable Bond Count	5	ChemAxon
Refractivity	89.66 m³·mol⁻¹	ChemAxon
Polarizability	36.02 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00012061

Chemspider ID

25046653

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

23786372

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Kimani NM, Matasyoh JC, Kaiser M, Brun R, Schmidt TJ: Anti-Trypanosomatid Elemanolide Sesquiterpene Lactones from Vernonia lasiopus O. Hoffm. Molecules. 2017 Apr 8;22(4):597. doi: 10.3390/molecules22040597. [PubMed:28397756 ]
LOTUS database [Link]

Showing NP-Card for (1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate (NP0243545)

MOL for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

3D MOL for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

3D SDF for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

3D-SDF for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

PDB for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

3D PDB for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

SMILES for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

INCHI for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

Structure for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)

3D Structure for NP0243545 ((1r,2r,5s,6r,7s,9r)-9-ethenyl-5-methyl-13-methylidene-4,12-dioxo-3,11-dioxatricyclo[7.4.0.0²,⁶]tridecan-7-yl 2-(hydroxymethyl)prop-2-enoate)