NP-MRD: Showing NP-Card for 5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one (NP0242711)

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Record Information

Version

2.0

Created at

2022-09-07 03:05:29 UTC

Updated at

2022-09-07 03:05:29 UTC

NP-MRD ID

NP0242711

Secondary Accession Numbers

None

Natural Product Identification

Common Name

5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one

Description

5,8,11,14,17-Pentahydroxy-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-12-(propan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating. 5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one is found in Nigrospora oryzae and Salinispora arenicola. 5,8,11,14,17-Pentahydroxy-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-12-(propan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one is an extremely weak basic (essentially neutral) compound (based on its pKa).

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1533004231517552D          

 45 45  0  0  0  0            999 V2000
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M  END

     RDKit          3D

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  3 51  1  0
  3 52  1  0
  4 53  1  0
  4 54  1  0
  5 55  1  0
  5 56  1  0
  6 57  1  0
  6 58  1  0
  7 59  1  1
  8 60  1  0
  8 61  1  0
  8 62  1  0
  9 63  1  6
 10 64  1  0
 10 65  1  0
 13 66  1  0
 14 67  1  0
 14 68  1  0
 17 69  1  0
 18 70  1  6
 19 71  1  0
 20 72  1  0
 20 73  1  0
 20 74  1  0
 21 75  1  0
 21 76  1  0
 21 77  1  0
 24 78  1  0
 25 79  1  1
 26 80  1  0
 26 81  1  0
 27 82  1  0
 28 83  1  0
 28 84  1  0
 28 85  1  0
 29 86  1  0
 29 87  1  0
 29 88  1  0
 32 89  1  0
 33 90  1  1
 34 91  1  0
 34 92  1  0
 34 93  1  0
 37 94  1  0
 38 95  1  1
 39 96  1  0
 39 97  1  0
 40 98  1  0
 40 99  1  0
 42100  1  0
 42101  1  0
 42102  1  0
M  END


  Mrv1533004231517552D          

 45 45  0  0  0  0            999 V2000
   -4.3490   -0.2622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6345    0.1503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9201   -0.2622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2056    0.1503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4911   -0.2622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7767    0.1503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0622   -0.2622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0622   -1.0872    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6523    0.1503    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0226    0.6833    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.3349    1.4469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0993    2.1484    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1576    1.3858    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8947    1.9071    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6583    1.5948    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7697    0.7773    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3106    2.0999    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.0742    1.7876    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9629    2.6050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6151    3.1102    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1993    2.9174    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7265    2.2927    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1169    3.0195    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.4901    1.9804    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.6014    1.1630    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3650    0.8506    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0173    1.3558    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9059    2.1732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7809    1.0435    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9491    0.6578    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1855    0.9701    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0605   -0.1596    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    4.4082   -0.6648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.5195   -1.4822    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6446   -0.3525    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5333    0.4650    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9923   -0.8576    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.2287   -0.5453    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3400   -1.3627    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1036   -1.6751    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2150   -2.4925    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
    3.9786   -2.8048    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5764   -1.0504    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6878   -1.8679    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.8128   -0.7381    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  7  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  2  0  0  0  0
 11 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  2  0  0  0  0
 15 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 19 21  1  0  0  0  0
 18 22  1  0  0  0  0
 22 23  2  0  0  0  0
 22 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 27 29  1  0  0  0  0
 25 30  1  0  0  0  0
 30 31  2  0  0  0  0
 30 32  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 35  1  0  0  0  0
 35 36  2  0  0  0  0
 35 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 38 43  1  0  0  0  0
 43 44  2  0  0  0  0
 43 45  1  0  0  0  0
  9 45  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0242711

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CCCCCCC(C)C1CC(=O)NCC(=O)NC(C(C)C)C(=O)NC(CC(C)C)C(=O)NC(C)C(=O)NC(CCSC)C(=O)O1

> <INCHI_IDENTIFIER>
InChI=1S/C32H57N5O7S/c1-9-10-11-12-13-21(6)25-17-26(38)33-18-27(39)37-28(20(4)5)31(42)36-24(16-19(2)3)30(41)34-22(7)29(40)35-23(14-15-45-8)32(43)44-25/h19-25,28H,9-18H2,1-8H3,(H,33,38)(H,34,41)(H,35,40)(H,36,42)(H,37,39)

> <INCHI_KEY>
LRQDGGBYOKMXOJ-UHFFFAOYSA-N

> <FORMULA>
C32H57N5O7S

> <MOLECULAR_WEIGHT>
655.9

> <EXACT_MASS>
655.397870369

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_ATOM_COUNT>
102

> <JCHEM_AVERAGE_POLARIZABILITY>
73.30715469697847

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-12-(propan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadecane-2,5,8,11,14,17-hexone

> <ALOGPS_LOGP>
3.18

> <JCHEM_LOGP>
2.9294781986666667

> <ALOGPS_LOGS>
-4.94

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.213960824105458

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.733922060277536

> <JCHEM_PKA_STRONGEST_BASIC>
-2.0766371314059042

> <JCHEM_POLAR_SURFACE_AREA>
171.79999999999998

> <JCHEM_REFRACTIVITY>
173.72350000000003

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.50e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadecane-2,5,8,11,14,17-hexone

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 23-APR-15   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   23-APR-15         0                                  
HETATM    1  C   UNK     0      -8.118  -0.489   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -6.784   0.281   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -5.451  -0.489   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -4.117   0.281   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.783  -0.489   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -1.450   0.281   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -0.116  -0.489   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.116  -2.029   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       1.218   0.281   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.042   1.275   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       0.625   2.701   0.000  0.00  0.00           C+0
HETATM   12  O   UNK     0      -0.185   4.010   0.000  0.00  0.00           O+0
HETATM   13  N   UNK     0       2.161   2.587   0.000  0.00  0.00           N+0
HETATM   14  C   UNK     0       3.537   3.560   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       4.962   2.977   0.000  0.00  0.00           C+0
HETATM   16  O   UNK     0       5.170   1.451   0.000  0.00  0.00           O+0
HETATM   17  N   UNK     0       6.180   3.920   0.000  0.00  0.00           N+0
HETATM   18  C   UNK     0       7.605   3.337   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       7.397   4.863   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       8.615   5.806   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       5.972   5.446   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       8.823   4.280   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       9.552   5.636   0.000  0.00  0.00           O+0
HETATM   24  N   UNK     0      10.248   3.697   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0      10.456   2.171   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      11.881   1.588   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      13.099   2.531   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      12.891   4.057   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      14.524   1.948   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       9.238   1.228   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       7.813   1.811   0.000  0.00  0.00           O+0
HETATM   32  N   UNK     0       9.446  -0.298   0.000  0.00  0.00           N+0
HETATM   33  C   UNK     0       8.229  -1.241   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       8.436  -2.767   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       6.803  -0.658   0.000  0.00  0.00           C+0
HETATM   36  O   UNK     0       6.595   0.868   0.000  0.00  0.00           O+0
HETATM   37  N   UNK     0       5.586  -1.601   0.000  0.00  0.00           N+0
HETATM   38  C   UNK     0       4.160  -1.018   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       4.368  -2.544   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       5.793  -3.127   0.000  0.00  0.00           C+0
HETATM   41  S   UNK     0       6.001  -4.653   0.000  0.00  0.00           S+0
HETATM   42  C   UNK     0       7.427  -5.236   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       2.943  -1.961   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0       3.150  -3.487   0.000  0.00  0.00           O+0
HETATM   45  O   UNK     0       1.517  -1.378   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8    9                                                  
CONECT    8    7                                                            
CONECT    9    7   10   45                                                  
CONECT   10    9   11                                                       
CONECT   11   10   12   13                                                  
CONECT   12   11                                                            
CONECT   13   11   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16   17                                                  
CONECT   16   15                                                            
CONECT   17   15   18                                                       
CONECT   18   17   19   22                                                  
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19                                                            
CONECT   22   18   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22   25                                                       
CONECT   25   24   26   30                                                  
CONECT   26   25   27                                                       
CONECT   27   26   28   29                                                  
CONECT   28   27                                                            
CONECT   29   27                                                            
CONECT   30   25   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33                                                       
CONECT   33   32   34   35                                                  
CONECT   34   33                                                            
CONECT   35   33   36   37                                                  
CONECT   36   35                                                            
CONECT   37   35   38                                                       
CONECT   38   37   39   43                                                  
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41                                                            
CONECT   43   38   44   45                                                  
CONECT   44   43                                                            
CONECT   45   43    9                                                       
MASTER        0    0    0    0    0    0    0    0   45    0   90    0
END

View in JSmol

Synonyms

Value	Source
5,8,11,14,17-Pentahydroxy-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulphanyl)ethyl]-19-(octan-2-yl)-12-(propan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one	Generator

Chemical Formula

C₃₂H₅₇N₅O₇S

Average Mass

655.9000 Da

Monoisotopic Mass

655.39787 Da

IUPAC Name

6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-12-(propan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadecane-2,5,8,11,14,17-hexone

Traditional Name

12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadecane-2,5,8,11,14,17-hexone

CAS Registry Number

Not Available

SMILES

CCCCCCC(C)C1CC(=O)NCC(=O)NC(C(C)C)C(=O)NC(CC(C)C)C(=O)NC(C)C(=O)NC(CCSC)C(=O)O1

InChI Identifier

InChI=1S/C32H57N5O7S/c1-9-10-11-12-13-21(6)25-17-26(38)33-18-27(39)37-28(20(4)5)31(42)36-24(16-19(2)3)30(41)34-22(7)29(40)35-23(14-15-45-8)32(43)44-25/h19-25,28H,9-18H2,1-8H3,(H,33,38)(H,34,41)(H,35,40)(H,36,42)(H,37,39)

InChI Key

LRQDGGBYOKMXOJ-UHFFFAOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Nigrospora oryzae	LOTUS Database	35616633
Salinispora arenicola	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cyclic depsipeptides. These are natural or synthetic compounds having sequences of amino and hydroxy carboxylic acid residues (usually α-amino and α-hydroxy acids) connected in a ring. The residues are commonly but not necessarily regularly alternating.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Peptidomimetics

Sub Class

Depsipeptides

Direct Parent

Cyclic depsipeptides

Alternative Parents

Substituents

Cyclic depsipeptide
Alpha-amino acid ester
Macrolactam
Macrolide
Alpha-amino acid or derivatives
Cyclic carboximidic acid
Carboxylic acid ester
Lactone
Carboxylic acid derivative
Oxacycle
Azacycle
Monocarboxylic acid or derivatives
Polyol
Thioether
Sulfenyl compound
Propargyl-type 1,3-dipolar organic compound
Organic 1,3-dipolar compound
Dialkylthioether
Organoheterocyclic compound
Organonitrogen compound
Organooxygen compound
Organosulfur compound
Organopnictogen compound
Organic oxide
Hydrocarbon derivative
Organic nitrogen compound
Organic oxygen compound
Carbonyl group
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	3.18	ALOGPS
logP	2.93	ChemAxon
logS	-4.9	ALOGPS
pKa (Strongest Acidic)	11.73	ChemAxon
pKa (Strongest Basic)	-2.1	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	171.8 Å²	ChemAxon
Rotatable Bond Count	12	ChemAxon
Refractivity	173.72 m³·mol⁻¹	ChemAxon
Polarizability	73.31 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

56667915

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

LOTUS database [Link]

Showing NP-Card for 5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one (NP0242711)

MOL for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

3D MOL for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

3D SDF for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

3D-SDF for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

PDB for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

3D PDB for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

SMILES for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

INCHI for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

Structure for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)

3D Structure for NP0242711 (5,8,11,14,17-pentahydroxy-12-isopropyl-6-methyl-9-(2-methylpropyl)-3-[2-(methylsulfanyl)ethyl]-19-(octan-2-yl)-1-oxa-4,7,10,13,16-pentaazacyclononadeca-4,7,10,13,16-pentaen-2-one)