NP-MRD: Showing NP-Card for (1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione (NP0242472)

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Record Information

Version

2.0

Created at

2022-09-07 02:47:46 UTC

Updated at

2022-09-07 02:47:46 UTC

NP-MRD ID

NP0242472

Secondary Accession Numbers

None

Natural Product Identification

Common Name

(1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione

Description

Aoibaclyin belongs to the class of organic compounds known as cucurbitacin glycosides. These are polycyclic compounds containing a carbohydrate derivative glycosidically linked to a curcubitane nucleus. (1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione is found in Gymnopetalum integrifolium and Trichosanthes tricuspidata. (1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione was first documented in 2002 (PMID: 12036020). Based on a literature review very few articles have been published on Aoibaclyin.

Structure

MOL 3D MOL SDF PDB SMILES InChI


  Mrv1652309072204472D          

 46 51  0  0  1  0            999 V2000
   -6.2082   -2.6720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4238   -2.4165    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2529   -1.6094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8103   -2.9681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0259   -2.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8550   -1.9054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0705   -1.6499    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4584   -0.9217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4208   -1.1414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4570   -2.2014    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6279   -3.0085    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9131   -3.4205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3005   -2.8680    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0449   -3.6524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4799   -2.9536    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1438   -3.7070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6768   -3.7926    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1612   -3.1248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250   -2.3714    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3095   -1.7036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.6144   -1.1213    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4350   -1.2069    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7711   -1.9604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5916   -2.0460    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
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    5.2243    0.0431    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9194   -0.5391    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5832    0.2143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.3316   -1.5323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1528   -0.8645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1522   -1.4467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6366   -2.1146    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0496   -1.4004    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4123   -3.2641    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  6  0  0  0
  7 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
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 15 16  1  1  0  0  0
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 17 18  2  0  0  0  0
 19 18  1  6  0  0  0
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 30 32  1  0  0  0  0
 23 32  1  0  0  0  0
 32 33  1  6  0  0  0
 21 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
 18 36  1  0  0  0  0
 36 37  1  0  0  0  0
 36 38  1  0  0  0  0
 19 39  1  0  0  0  0
 15 39  1  0  0  0  0
 39 40  1  6  0  0  0
 39 41  1  0  0  0  0
 41 42  2  0  0  0  0
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 43 44  1  0  0  0  0
 10 44  1  0  0  0  0
 13 44  1  0  0  0  0
 44 45  1  6  0  0  0
 11 46  1  0  0  0  0
  5 46  1  0  0  0  0
M  END

     RDKit          3D

 98103  0  0  0  0  0  0  0  0999 V2000
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    5.9999   -0.2088   -0.3769 C   0  0  2  0  0  0  0  0  0  0  0  0
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  1  2  1  0
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  2  4  2  3
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  5  6  1  0
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 34 35  2  0
 34 36  1  0
 36 37  1  0
 36 38  1  0
 19 39  1  0
 39 40  1  1
 39 41  1  0
 41 42  2  0
 41 43  1  0
 43 44  1  0
 44 45  1  1
 11 46  1  0
 46  5  1  0
 44 10  1  0
 44 13  1  0
 39 15  1  0
 36 18  1  0
 32 23  1  0
  1 47  1  0
  1 48  1  0
  1 49  1  0
  3 50  1  0
  3 51  1  0
  3 52  1  0
  4 53  1  0
  5 54  1  1
  6 55  1  0
  6 56  1  0
  8 57  1  0
  8 58  1  0
  8 59  1  0
  9 60  1  0
 10 61  1  6
 11 62  1  1
 12 63  1  0
 12 64  1  0
 14 65  1  0
 14 66  1  0
 14 67  1  0
 15 68  1  1
 16 69  1  0
 16 70  1  0
 17 71  1  0
 19 72  1  6
 20 73  1  0
 23 74  1  1
 25 75  1  1
 26 76  1  0
 26 77  1  0
 27 78  1  0
 28 79  1  6
 29 80  1  0
 30 81  1  1
 31 82  1  0
 32 83  1  6
 33 84  1  0
 37 85  1  0
 37 86  1  0
 37 87  1  0
 38 88  1  0
 38 89  1  0
 38 90  1  0
 40 91  1  0
 40 92  1  0
 40 93  1  0
 43 94  1  0
 43 95  1  0
 45 96  1  0
 45 97  1  0
 45 98  1  0
M  END


  Mrv1652309072204472D          

 46 51  0  0  1  0            999 V2000
   -6.2082   -2.6720    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4238   -2.4165    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2529   -1.6094    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8103   -2.9681    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0259   -2.7125    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -3.8550   -1.9054    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0705   -1.6499    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -3.4584   -0.9217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4208   -1.1414    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.4570   -2.2014    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -2.6279   -3.0085    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.9131   -3.4205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3005   -2.8680    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
   -1.0449   -3.6524    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4799   -2.9536    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -0.1438   -3.7070    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6768   -3.7926    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1612   -3.1248    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8250   -2.3714    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    1.3095   -1.7036    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1300   -1.7892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6144   -1.1213    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4350   -1.2069    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.7711   -1.9604    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5916   -2.0460    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.9278   -2.7994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4434   -3.4672    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.0761   -1.3782    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.8966   -1.4638    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7399   -0.6247    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    5.2243    0.0431    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.9194   -0.5391    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    3.5832    0.2143    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.4661   -2.5426    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2867   -2.6282    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9817   -3.2104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6322   -3.7178    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9248   -4.0334    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0045   -2.2858    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
    0.4889   -1.6180    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3316   -1.5323    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1528   -0.8645    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1522   -1.4467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6366   -2.1146    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   -2.0496   -1.4004    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4123   -3.2641    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2  4  2  0  0  0  0
  5  4  1  1  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  1  0  0  0
  7  9  1  6  0  0  0
  7 10  1  0  0  0  0
 10 11  1  6  0  0  0
 11 12  1  1  0  0  0
 12 13  1  0  0  0  0
 13 14  1  1  0  0  0
 13 15  1  0  0  0  0
 15 16  1  1  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 19 18  1  6  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 21 22  1  0  0  0  0
 23 22  1  1  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  1  0  0  0
 26 27  1  0  0  0  0
 25 28  1  0  0  0  0
 28 29  1  6  0  0  0
 28 30  1  0  0  0  0
 30 31  1  1  0  0  0
 30 32  1  0  0  0  0
 23 32  1  0  0  0  0
 32 33  1  6  0  0  0
 21 34  1  0  0  0  0
 34 35  2  0  0  0  0
 34 36  1  0  0  0  0
 18 36  1  0  0  0  0
 36 37  1  0  0  0  0
 36 38  1  0  0  0  0
 19 39  1  0  0  0  0
 15 39  1  0  0  0  0
 39 40  1  6  0  0  0
 39 41  1  0  0  0  0
 41 42  2  0  0  0  0
 41 43  1  0  0  0  0
 43 44  1  0  0  0  0
 10 44  1  0  0  0  0
 13 44  1  0  0  0  0
 44 45  1  6  0  0  0
 11 46  1  0  0  0  0
  5 46  1  0  0  0  0
M  END
> <DATABASE_ID>
NP0242472

> <DATABASE_NAME>
NP-MRD

> <SMILES>
CC(C)=C[C@H]1C[C@](C)(O)[C@H]2[C@@H](C[C@@]3(C)[C@@H]4CC=C5[C@@H](C=C(O[C@@H]6O[C@H](CO)[C@@H](O)[C@H](O)[C@H]6O)C(=O)C5(C)C)[C@]4(C)C(=O)C[C@]23C)O1

> <INCHI_IDENTIFIER>
InChI=1S/C36H52O10/c1-17(2)11-18-13-35(7,43)29-22(44-18)14-33(5)24-10-9-19-20(36(24,8)25(38)15-34(29,33)6)12-21(30(42)32(19,3)4)45-31-28(41)27(40)26(39)23(16-37)46-31/h9,11-12,18,20,22-24,26-29,31,37,39-41,43H,10,13-16H2,1-8H3/t18-,20+,22+,23+,24-,26+,27-,28+,29-,31+,33-,34+,35-,36-/m0/s1

> <INCHI_KEY>
MJHZIBPAZLJXHU-DJJXZBOYSA-N

> <FORMULA>
C36H52O10

> <MOLECULAR_WEIGHT>
644.802

> <EXACT_MASS>
644.356047874

> <JCHEM_ACCEPTOR_COUNT>
10

> <JCHEM_ATOM_COUNT>
98

> <JCHEM_AVERAGE_POLARIZABILITY>
71.81232844702022

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(1S,2S,4R,6R,8S,9R,10R,13R,14R)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0^{2,10}.0^{4,9}.0^{14,19}]henicosa-15,19-diene-12,17-dione

> <JCHEM_LOGP>
2.0223352126666656

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
6

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
13.180777015457444

> <JCHEM_PKA_STRONGEST_ACIDIC>
12.198241269551554

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9760429698901945

> <JCHEM_POLAR_SURFACE_AREA>
162.98

> <JCHEM_REFRACTIVITY>
171.3708000000001

> <JCHEM_ROTATABLE_BOND_COUNT>
4

> <JCHEM_RULE_OF_FIVE>
0

> <JCHEM_TRADITIONAL_IUPAC>
(1S,2S,4R,6R,8S,9R,10R,13R,14R)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0^{2,10}.0^{4,9}.0^{14,19}]henicosa-15,19-diene-12,17-dione

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 07-SEP-22   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   07-SEP-22         0                                  
HETATM    1  C   UNK     0     -11.589  -4.988   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -10.124  -4.511   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -9.805  -3.004   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -8.979  -5.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -7.515  -5.063   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -7.196  -3.557   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -5.732  -3.080   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -6.456  -1.721   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0      -4.519  -2.131   0.000  0.00  0.00           O+0
HETATM   10  C   UNK     0      -4.586  -4.109   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -4.905  -5.616   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -3.571  -6.385   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.428  -5.354   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -1.950  -6.818   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -0.896  -5.513   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      -0.268  -6.920   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.263  -7.080   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       2.168  -5.833   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       1.540  -4.427   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       2.444  -3.180   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       3.976  -3.340   0.000  0.00  0.00           C+0
HETATM   22  O   UNK     0       4.880  -2.093   0.000  0.00  0.00           O+0
HETATM   23  C   UNK     0       6.412  -2.253   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0       7.039  -3.659   0.000  0.00  0.00           O+0
HETATM   25  C   UNK     0       8.571  -3.819   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0       9.199  -5.226   0.000  0.00  0.00           C+0
HETATM   27  O   UNK     0       8.294  -6.472   0.000  0.00  0.00           O+0
HETATM   28  C   UNK     0       9.475  -2.573   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      11.007  -2.732   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0       8.848  -1.166   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0       9.752   0.080   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0       7.316  -1.006   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0       6.689   0.400   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0       4.603  -4.746   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0       6.135  -4.906   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0       3.699  -5.993   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       4.914  -6.940   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       3.593  -7.529   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       0.008  -4.267   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       0.913  -3.020   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      -0.619  -2.860   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0       0.285  -1.614   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -2.151  -2.701   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0      -3.055  -3.947   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      -3.826  -2.614   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      -6.370  -6.093   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3    4                                                  
CONECT    3    2                                                            
CONECT    4    2    5                                                       
CONECT    5    4    6   46                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8    9   10                                             
CONECT    8    7                                                            
CONECT    9    7                                                            
CONECT   10    7   11   44                                                  
CONECT   11   10   12   46                                                  
CONECT   12   11   13                                                       
CONECT   13   12   14   15   44                                             
CONECT   14   13                                                            
CONECT   15   13   16   39                                                  
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   36                                                  
CONECT   19   18   20   39                                                  
CONECT   20   19   21                                                       
CONECT   21   20   22   34                                                  
CONECT   22   21   23                                                       
CONECT   23   22   24   32                                                  
CONECT   24   23   25                                                       
CONECT   25   24   26   28                                                  
CONECT   26   25   27                                                       
CONECT   27   26                                                            
CONECT   28   25   29   30                                                  
CONECT   29   28                                                            
CONECT   30   28   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   23   33                                                  
CONECT   33   32                                                            
CONECT   34   21   35   36                                                  
CONECT   35   34                                                            
CONECT   36   34   18   37   38                                             
CONECT   37   36                                                            
CONECT   38   36                                                            
CONECT   39   19   15   40   41                                             
CONECT   40   39                                                            
CONECT   41   39   42   43                                                  
CONECT   42   41                                                            
CONECT   43   41   44                                                       
CONECT   44   43   10   13   45                                             
CONECT   45   44                                                            
CONECT   46   11    5                                                       
MASTER        0    0    0    0    0    0    0    0   46    0  102    0
END

View in JSmol

Synonyms

Not Available

Chemical Formula

C₃₆H₅₂O₁₀

Average Mass

644.8020 Da

Monoisotopic Mass

644.35605 Da

IUPAC Name

(1S,2S,4R,6R,8S,9R,10R,13R,14R)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0^{2,10}.0^{4,9}.0^{14,19}]henicosa-15,19-diene-12,17-dione

Traditional Name

CAS Registry Number

Not Available

SMILES

CC(C)=C[C@H]1C[C@](C)(O)[C@H]2[C@@H](C[C@@]3(C)[C@@H]4CC=C5[C@@H](C=C(O[C@@H]6O[C@H](CO)[C@@H](O)[C@H](O)[C@H]6O)C(=O)C5(C)C)[C@]4(C)C(=O)C[C@]23C)O1

InChI Identifier

InChI=1S/C36H52O10/c1-17(2)11-18-13-35(7,43)29-22(44-18)14-33(5)24-10-9-19-20(36(24,8)25(38)15-34(29,33)6)12-21(30(42)32(19,3)4)45-31-28(41)27(40)26(39)23(16-37)46-31/h9,11-12,18,20,22-24,26-29,31,37,39-41,43H,10,13-16H2,1-8H3/t18-,20+,22+,23+,24-,26+,27-,28+,29-,31+,33-,34+,35-,36-/m0/s1

InChI Key

MJHZIBPAZLJXHU-DJJXZBOYSA-N

Experimental Spectra

Not Available

Predicted Spectra

Spectrum Type	Description	Depositor ID	Depositor Organization	Depositor	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 25 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 252 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 50 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 75 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 101 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 126 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 151 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 176 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 201 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 226 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	Wishart Lab	Wishart Lab	David Wishart	2021-06-20	View Spectrum

Chemical Shift Submissions

Not Available

Species

Species of Origin

Species Name	Source	Reference
Gymnopetalum integrifolium	LOTUS Database	35616633
Trichosanthes tricuspidata	LOTUS Database	35616633

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as cucurbitacin glycosides. These are polycyclic compounds containing a carbohydrate derivative glycosidically linked to a curcubitane nucleus.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Steroids and steroid derivatives

Sub Class

Steroidal glycosides

Direct Parent

Cucurbitacin glycosides

Alternative Parents

Substituents

Cucurbitacin glycoside skeleton
Diterpene glycoside
20-hydroxysteroid
Diterpenoid
3-oxo-delta-1-steroid
3-oxosteroid
14-alpha-methylsteroid
Hydroxysteroid
Oxosteroid
11-oxosteroid
Delta-1-steroid
Terpene glycoside
Hexose monosaccharide
Glycosyl compound
O-glycosyl compound
Cyclohexenone
Monosaccharide
Oxane
Tertiary alcohol
Cyclic ketone
Ketone
Secondary alcohol
Acetal
Oxacycle
Dialkyl ether
Organoheterocyclic compound
Ether
Polyol
Organic oxide
Hydrocarbon derivative
Carbonyl group
Organooxygen compound
Alcohol
Organic oxygen compound
Aldehyde
Primary alcohol
Aliphatic heteropolycyclic compound

Molecular Framework

Aliphatic heteropolycyclic compounds

External Descriptors

Not Available

Physical Properties

State

Not Available

Experimental Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Predicted Properties

Property	Value	Source
logP	2.02	ChemAxon
pKa (Strongest Acidic)	12.2	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	10	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	162.98 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	171.37 m³·mol⁻¹	ChemAxon
Polarizability	71.81 Å³	ChemAxon
Number of Rings	6	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FoodDB ID

Not Available

KNApSAcK ID

C00032710

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

6325478

PDB ID

Not Available

ChEBI ID

Not Available

Good Scents ID

Not Available

References

General References

Sekine T, Kurihara H, Waku M, Ikegami F, Ruangrungsi N: A new pentacyclic cucurbitane glucoside and a new triterpene from the fruits of Gymnopetalum integrifolium. Chem Pharm Bull (Tokyo). 2002 May;50(5):645-8. doi: 10.1248/cpb.50.645. [PubMed:12036020 ]
LOTUS database [Link]

Showing NP-Card for (1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione (NP0242472)

MOL for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

3D MOL for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

3D SDF for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

3D-SDF for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

PDB for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

3D PDB for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

SMILES for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

INCHI for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

Structure for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)

3D Structure for NP0242472 ((1s,2s,4r,6r,8s,9r,10r,13r,14r)-8-hydroxy-2,8,10,13,18,18-hexamethyl-6-(2-methylprop-1-en-1-yl)-16-{[(2s,3r,4s,5s,6r)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}-5-oxapentacyclo[11.8.0.0²,¹⁰.0⁴,⁹.0¹⁴,¹⁹]henicosa-15,19-diene-12,17-dione)