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Record Information
Version2.0
Created at2022-09-07 01:47:47 UTC
Updated at2022-09-07 01:47:48 UTC
NP-MRD IDNP0241659
Secondary Accession NumbersNone
Natural Product Identification
Common Name2-amino-4-({4-[2-carboxy-2-(trimethylammonio)ethyl]-3h-imidazol-2-yl}sulfanyl)-3-hydroxybutanoate
Description2-Amino-4-({5-[2-carboxy-2-(trimethylazaniumyl)ethyl]-1H-imidazol-2-yl}sulfanyl)-3-hydroxybutanoate belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 2-amino-4-({4-[2-carboxy-2-(trimethylammonio)ethyl]-3h-imidazol-2-yl}sulfanyl)-3-hydroxybutanoate is found in Clitocybe acromelalga. 2-Amino-4-({5-[2-carboxy-2-(trimethylazaniumyl)ethyl]-1H-imidazol-2-yl}sulfanyl)-3-hydroxybutanoate is a very strong basic compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
2-Amino-4-({5-[2-carboxy-2-(trimethylazaniumyl)ethyl]-1H-imidazol-2-yl}sulfanyl)-3-hydroxybutanoic acidGenerator
2-Amino-4-({5-[2-carboxy-2-(trimethylazaniumyl)ethyl]-1H-imidazol-2-yl}sulphanyl)-3-hydroxybutanoateGenerator
2-Amino-4-({5-[2-carboxy-2-(trimethylazaniumyl)ethyl]-1H-imidazol-2-yl}sulphanyl)-3-hydroxybutanoic acidGenerator
Chemical FormulaC13H22N4O5S
Average Mass346.4000 Da
Monoisotopic Mass346.13109 Da
IUPAC Name3-{2-[(3-amino-3-carboxy-2-hydroxypropyl)sulfanyl]-1H-imidazol-5-yl}-2-(trimethylazaniumyl)propanoate
Traditional Name3-{2-[(3-amino-3-carboxy-2-hydroxypropyl)sulfanyl]-3H-imidazol-4-yl}-2-(trimethylammonio)propanoate
CAS Registry NumberNot Available
SMILES
C[N+](C)(C)C(CC1=CN=C(N1)SCC(O)C(N)C(O)=O)C([O-])=O
InChI Identifier
InChI=1S/C13H22N4O5S/c1-17(2,3)8(11(19)20)4-7-5-15-13(16-7)23-6-9(18)10(14)12(21)22/h5,8-10,18H,4,6,14H2,1-3H3,(H2-,15,16,19,20,21,22)
InChI KeyPBGMXJHSCOZVQW-UHFFFAOYSA-N
Experimental Spectra
Not Available
Predicted Spectra
Spectrum TypeDescriptionDepositor IDDepositor OrganizationDepositorDeposition DateView
1D NMR13C NMR Spectrum (1D, 25 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 100 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 252 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 1000 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 50 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 200 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 75 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 300 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 101 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 400 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 126 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 500 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 151 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 600 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 176 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 700 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 201 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 800 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR13C NMR Spectrum (1D, 226 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
1D NMR1H NMR Spectrum (1D, 900 MHz, H2O, predicted)Wishart LabWishart LabDavid Wishart2021-06-20View Spectrum
Chemical Shift Submissions
Not Available
Species
Species of Origin
Species NameSourceReference
Clitocybe acromelalgaLOTUS Database
Chemical Taxonomy
Description Belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassAmino acids, peptides, and analogues
Direct ParentHistidine and derivatives
Alternative Parents
Substituents
  • Histidine or derivatives
  • Alpha-amino acid
  • Aryl thioether
  • Imidazolyl carboxylic acid derivative
  • Thia fatty acid
  • Alkylarylthioether
  • Aralkylamine
  • Hydroxy fatty acid
  • Beta-hydroxy acid
  • Fatty acyl
  • Hydroxy acid
  • Dicarboxylic acid or derivatives
  • Heteroaromatic compound
  • Imidazole
  • Azole
  • Tetraalkylammonium salt
  • Quaternary ammonium salt
  • Carboxylic acid salt
  • Amino acid
  • Secondary alcohol
  • Sulfenyl compound
  • Thioether
  • Carboxylic acid
  • Azacycle
  • Organoheterocyclic compound
  • Amine
  • Organonitrogen compound
  • Primary aliphatic amine
  • Organooxygen compound
  • Organosulfur compound
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Organic oxide
  • Primary amine
  • Alcohol
  • Carbonyl group
  • Organopnictogen compound
  • Organic oxygen compound
  • Organic zwitterion
  • Organic salt
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Physical Properties
StateNot Available
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-1.2ALOGPS
logP-7.7ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)1.39ChemAxon
pKa (Strongest Basic)8.96ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area152.36 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity107.06 m³·mol⁻¹ChemAxon
Polarizability35.11 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
HMDB IDNot Available
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound78178114
PDB IDNot Available
ChEBI IDNot Available
Good Scents IDNot Available
References
General References
  1. LOTUS database [Link]